RNA id: TU1456422


Basic Information

Item Value
RNA id TU1456422
length 553
lncRNA type intronic
GC content 0.53
exon number 2
gene id G1275120
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 26686022 ~ 26687096 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCCCTCAGCGAGCAGGGGAGTGCGAAGGGTTCCATTTGTCAAAGGTGCCCGGcagttttttttccttctcaacACTTTCCCGGCTCCGTCCCAAACTCATTGTCTGAGCTAAGGCAGGACATTAGTCACCGCGGTGCTAGTGGAGCCTGCGGGGCTGTGGGACCAACCAACGCTGTTCTGGAGCAGGGACTGCtagtcggacagagagagaactagaagagggaaagaggaggagtgatggagagtgtgtgaaagagggaaggggagaagaaagaaagaaagaaagaaaaagggagaaagagcgagtgtggctgtgtgtttgagaaagagagatatagtgtggagaaaggagagagagcattagaggtgtggaggaaggagagagcattagaggtgtggaggaaggagagagagcattagaggtgtggaggaaggagagagagcgttggaggtgtggaggaaggagagagagcgttagaggtgtggaggaaggagagagagcattagatgtgtggaggaaggagagagagcgttaGAGGTGTGGAGGAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1456355 lncRNA downstream 113838 26571923 ~ 26572184 (-) True G1275056
TU1456354 lncRNA downstream 114139 26571606 ~ 26571883 (-) True G1275055
TU1456346 lncRNA downstream 118310 26566397 ~ 26567712 (-) False LOC110489888
TU1456311 lncRNA downstream 121375 26562583 ~ 26564647 (-) True G1275013
TU1456270 lncRNA downstream 216127 26397313 ~ 26469895 (-) True G1274974
TU1456428 lncRNA upstream 8372 26695468 ~ 26695748 (-) True G1275126
TU1456663 lncRNA upstream 20817 26707913 ~ 26708152 (-) True G1275351
TU1456668 lncRNA upstream 28079 26715175 ~ 26715387 (-) True G1275356
TU1456670 lncRNA upstream 29943 26717039 ~ 26717239 (-) True G1275358
TU1456695 lncRNA upstream 45060 26732156 ~ 26732498 (-) True LOC110489890
XM_036944151.1 mRNA downstream 15900 26566351 ~ 26670122 (-) False LOC110489888
XM_021562843.2 mRNA downstream 157406 26513679 ~ 26528616 (-) True pxdc1b
XM_021562844.2 mRNA downstream 157408 26513679 ~ 26528614 (-) False pxdc1b
XM_021562842.2 mRNA downstream 179092 26439995 ~ 26506930 (-) True LOC110489884
XM_036944148.1 mRNA downstream 179352 26439995 ~ 26506670 (-) False LOC110489884
XM_021562851.2 mRNA upstream 32691 26719787 ~ 26723716 (-) True LOC110489889
LOC110489890 mRNA upstream 38359 26725455 ~ 26733092 (-) False LOC110489890
LOC110489892 mRNA upstream 47255 26734351 ~ 26743932 (-) False LOC110489892
XM_021562868.2 mRNA upstream 255626 26942722 ~ 26952371 (-) False LOC110489898
XM_021562867.2 mRNA upstream 258209 26945305 ~ 26952371 (-) False LOC110489898
TU1456348 other downstream 114614 26570278 ~ 26571408 (-) True LOC110489888
TU1456314 other downstream 123989 26554968 ~ 26562033 (-) True G1275016
TU1456313 other downstream 173947 26511525 ~ 26512075 (-) True G1275015
TU1455797 other downstream 637498 26046248 ~ 26048524 (-) False G1274532
TU1456686 other upstream 47117 26734213 ~ 26743607 (-) False LOC110489892
TU1456762 other upstream 150224 26837320 ~ 26841026 (-) True G1275434
TU1456819 other upstream 256199 26943295 ~ 26944164 (-) True LOC110489898
TU1457301 other upstream 541784 27228880 ~ 27231479 (-) True LOC110489905
TU1458029 other upstream 1271956 27959052 ~ 27959434 (-) True G1276566

Expression Profile