RNA id: TU1462454


Basic Information

Item Value
RNA id TU1462454
length 490
lncRNA type intronic
GC content 0.48
exon number 1
gene id G1280681
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 31427071 ~ 31427560 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaacaagcatttctcagccttgacgtacaggtcatgctccaacagtcgcccaagtaccttgcgcaccaaAGACACATGCGCGGCGCGTGTAGAGGAATAGACCAaaatgtcatcgatataaaccaccacaccctgcccttgcaggtccctgagaatctcgtctacaaaagATTGGAAGACTGCTGGAACATTCTTCAACCCGttcggcatgacgaggtactcataatggccggaTGAGGTACTAAAcactgtcttccactcatctccctcccagATACGCACCAAGTTATACgagctcctgagatccagttttgtgaaaaagTGTGCTCCGTGAAATGACTCAATCGCAGTggcaatgagaggtagtgggtaactgtaccccaccgtgatggaatttagacctatatagtcaatgcacggacgcaacactccctcctttttcttcacaaaaaagaaacttgaggaggcaGGTGATATGGAAGGCTGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1462441 lncRNA upstream 17519 31409339 ~ 31409552 (+) True G1280668
TU1462436 lncRNA upstream 29777 31397044 ~ 31397294 (+) True G1280663
TU1462412 lncRNA upstream 53838 31367559 ~ 31373233 (+) True G1280642
TU1462415 lncRNA upstream 54695 31371554 ~ 31372376 (+) True G1280645
TU1461787 lncRNA upstream 188205 31237674 ~ 31238866 (+) True G1280080
TU1462456 lncRNA downstream 1995 31429555 ~ 31429783 (+) True G1280683
TU1462459 lncRNA downstream 4727 31432287 ~ 31432869 (+) True G1280686
TU1462460 lncRNA downstream 7058 31434618 ~ 31434856 (+) True G1280687
TU1462527 lncRNA downstream 27110 31454670 ~ 31454892 (+) True G1280754
TU1462567 lncRNA downstream 60868 31488428 ~ 31488636 (+) True G1280793
XM_036944292.1 mRNA upstream 94374 31306646 ~ 31332697 (+) True wdr97
XM_021563067.2 mRNA upstream 120634 31289763 ~ 31306437 (+) False dync2i1
XM_036944298.1 mRNA downstream 13934 31441494 ~ 31447498 (+) True nrn1a
XM_036944299.1 mRNA downstream 331166 31758726 ~ 31792146 (+) True LOC110490003
XM_021563083.2 mRNA downstream 483226 31910786 ~ 31924479 (+) True LOC110490007
XM_021563084.2 mRNA downstream 535275 31962835 ~ 31974011 (+) True inhbaa
LOC118938888 mRNA downstream 580561 32008121 ~ 32011745 (+) True LOC118938888
TU1461526 other upstream 479741 30944171 ~ 30947330 (+) True G1279833
TU1461105 other upstream 1019054 30395867 ~ 30408017 (+) False htr5ab
TU1460985 other upstream 1123652 30303033 ~ 30303419 (+) True G1279349
TU1458797 other upstream 2611261 28815366 ~ 28815810 (+) True G1277279
TU1458659 other upstream 2802853 28574316 ~ 28624218 (+) True G1277159
TU1463280 other downstream 568607 31996167 ~ 31996513 (+) True G1281462
TU1464164 other downstream 1259998 32687558 ~ 32698036 (+) False G1282302
TU1466288 other downstream 2684247 34111807 ~ 34112271 (+) True G1284354
TU1468667 other downstream 4608023 36035583 ~ 36093396 (+) False G1286648
TU1469571 other downstream 5081518 36509078 ~ 36510512 (+) True G1287489

Expression Profile