RNA id: TU1463237


Basic Information

Item Value
RNA id TU1463237
length 219
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1281423
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 31946357 ~ 31946575 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATAGTCCACCAATACAAAATGGCACAGACAAAAATCCCCAAACTACGCTCTCGAATACTCAGAAACTCGTGCAAACGCACGAAGGAACAAACACAGTTCCGACACTTTACATACACGTGCGTAATAGtgcaaaaacaacaaacatcaaatacAATCGAGcgcaatacacacaagtctaatccTGCACGAATTACGGCAGGTAACAGGTGCCCTATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1463223 lncRNA upstream 8369 31937787 ~ 31937988 (+) True G1281410
TU1463094 lncRNA upstream 40685 31905462 ~ 31905672 (+) True G1281294
TU1463084 lncRNA upstream 59208 31886728 ~ 31887149 (+) True G1281284
TU1463075 lncRNA upstream 76182 31869871 ~ 31870175 (+) True G1281275
TU1463072 lncRNA upstream 78863 31867252 ~ 31867494 (+) True G1281272
TU1463242 lncRNA downstream 4493 31951068 ~ 31951326 (+) True G1281428
TU1463246 lncRNA downstream 7451 31954026 ~ 31954446 (+) True G1281432
TU1463247 lncRNA downstream 7989 31954564 ~ 31954926 (+) True G1281433
TU1463265 lncRNA downstream 29295 31975870 ~ 31976228 (+) True G1281447
TU1463266 lncRNA downstream 29670 31976245 ~ 31976450 (+) True G1281448
XM_021563083.2 mRNA upstream 21878 31910786 ~ 31924479 (+) True LOC110490007
XM_036944299.1 mRNA upstream 154211 31758726 ~ 31792146 (+) True LOC110490003
XM_036944298.1 mRNA upstream 498859 31441494 ~ 31447498 (+) True nrn1a
XM_036944292.1 mRNA upstream 613660 31306646 ~ 31332697 (+) True wdr97
XM_036944291.1 mRNA upstream 639920 31296818 ~ 31306437 (+) True dync2i1
XM_021563084.2 mRNA downstream 16260 31962835 ~ 31974011 (+) True inhbaa
LOC118938888 mRNA downstream 61546 32008121 ~ 32011745 (+) True LOC118938888
XM_021563088.2 mRNA downstream 404230 32350805 ~ 32479989 (+) False LOC110490011
XR_005036356.1 mRNA downstream 986221 32932796 ~ 32932850 (+) True LOC118938962
XM_021563090.2 mRNA downstream 1067631 33014206 ~ 33016957 (+) False LOC110490013
TU1461526 other upstream 999027 30944171 ~ 30947330 (+) True G1279833
TU1461105 other upstream 1538340 30395867 ~ 30408017 (+) False htr5ab
TU1460985 other upstream 1642938 30303033 ~ 30303419 (+) True G1279349
TU1458797 other upstream 3130547 28815366 ~ 28815810 (+) True G1277279
TU1458659 other upstream 3322139 28574316 ~ 28624218 (+) True G1277159
TU1463280 other downstream 49592 31996167 ~ 31996513 (+) True G1281462
TU1464164 other downstream 740983 32687558 ~ 32698036 (+) False G1282302
TU1466288 other downstream 2165232 34111807 ~ 34112271 (+) True G1284354
TU1468667 other downstream 4089008 36035583 ~ 36093396 (+) False G1286648
TU1469571 other downstream 4562503 36509078 ~ 36510512 (+) True G1287489

Expression Profile