RNA id: TU1464624



Basic Information


Item Value
RNA id TU1464624
length 208
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1282749
representative True

Chromosome Information


Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 32933730 ~ 32933937 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CATCAAGAGCCACACAGGTGCATCTTTTAACACTACAGTTTGCTGCTCCTTTACTTTTCAACCATCTCGGTTACGTGCTTTTCAACAGTTCTGGCAGACAGGCTTTTATCTTTGAGATGATTGTGTCTTTGTTAGGAAATCCATCAAATAAAGCCTGTGAACTACTGAGGAAAGTCTCCTTGATATATATTCCCCATCAGTAAATGGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1464608 lncRNA upstream 14320 32919035 ~ 32919410 (+) True G1282734
TU1464584 lncRNA upstream 31375 32896095 ~ 32902355 (+) True G1282710
TU1464575 lncRNA upstream 47786 32885697 ~ 32885944 (+) True G1282701
TU1464166 lncRNA upstream 236511 32687558 ~ 32697219 (+) True G1282302
TU1464108 lncRNA upstream 391979 32541512 ~ 32541751 (+) True G1282248
TU1464631 lncRNA downstream 5414 32939351 ~ 32939605 (+) True G1282756
TU1464639 lncRNA downstream 15925 32949862 ~ 32950159 (+) True G1282764
TU1464653 lncRNA downstream 27488 32961425 ~ 32961627 (+) True G1282778
TU1464666 lncRNA downstream 34561 32968498 ~ 32968768 (+) True G1282791
TU1464673 lncRNA downstream 37768 32971705 ~ 32971907 (+) True G1282798
XR_005036356.1 mRNA upstream 880 32932796 ~ 32932850 (+) True LOC118938962
XM_021563088.2 mRNA upstream 453741 32350805 ~ 32479989 (+) False LOC110490011
LOC118938888 mRNA upstream 921985 32008121 ~ 32011745 (+) True LOC118938888
XM_021563084.2 mRNA upstream 959719 31962835 ~ 31974011 (+) True inhbaa
XM_021563083.2 mRNA upstream 1009251 31910786 ~ 31924479 (+) True LOC110490007
XM_021563090.2 mRNA downstream 80269 33014206 ~ 33016957 (+) False LOC110490013
LOC110490956 mRNA downstream 165944 33099881 ~ 33262044 (+) True LOC110490956
XM_021563092.2 mRNA downstream 1343084 34277021 ~ 34325910 (+) False LOC110490016
XM_036944303.1 mRNA downstream 1356901 34290838 ~ 34325910 (+) True LOC110490016
XM_021563093.2 mRNA downstream 1689977 34623914 ~ 34822015 (+) False LOC110490017
TU1464164 other upstream 235694 32687558 ~ 32698036 (+) False G1282302
TU1463280 other upstream 937217 31996167 ~ 31996513 (+) True G1281462
TU1461526 other upstream 1986400 30944171 ~ 30947330 (+) True G1279833
TU1461105 other upstream 2525713 30395867 ~ 30408017 (+) False htr5ab
TU1460985 other upstream 2630311 30303033 ~ 30303419 (+) True G1279349
TU1466288 other downstream 1177870 34111807 ~ 34112271 (+) True G1284354
TU1468667 other downstream 3101646 36035583 ~ 36093396 (+) False G1286648
TU1469571 other downstream 3575141 36509078 ~ 36510512 (+) True G1287489
TU1471681 other downstream 5249499 38183436 ~ 38184003 (+) True G1289491
TU1471908 other downstream 5660943 38594880 ~ 38600241 (+) False G1289710

Expression Profile