RNA id: TU1464639



Basic Information


Item Value
RNA id TU1464639
length 298
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1282764
representative True

Chromosome Information


Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 32949862 ~ 32950159 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


taataatataacacaatgagttctggttcctccagaaatgtcctgtacctcgggcctaaaaagcatatcaactcttactaagtgctcaactacaactaactacataaatcatcacagTATACCtcacatcaaaacaaatgaaataccgtatacaaaaaggtggtagtcagtcggtcagtcagacaatccaatccgccaatagatctccagcggagaaaggccacgaagaacggagaggtgtagtccacggacgcaaagagtggatccgatcctgggtaaactctattaggctacaaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1464631 lncRNA upstream 10257 32939351 ~ 32939605 (+) True G1282756
TU1464624 lncRNA upstream 15925 32933730 ~ 32933937 (+) True G1282749
TU1464608 lncRNA upstream 30452 32919035 ~ 32919410 (+) True G1282734
TU1464584 lncRNA upstream 47507 32896095 ~ 32902355 (+) True G1282710
TU1464575 lncRNA upstream 63918 32885697 ~ 32885944 (+) True G1282701
TU1464653 lncRNA downstream 11266 32961425 ~ 32961627 (+) True G1282778
TU1464666 lncRNA downstream 18339 32968498 ~ 32968768 (+) True G1282791
TU1464673 lncRNA downstream 21546 32971705 ~ 32971907 (+) True G1282798
TU1464682 lncRNA downstream 25072 32975231 ~ 32975616 (+) True G1282807
TU1464721 lncRNA downstream 56016 33006175 ~ 33006389 (+) True G1282845
XR_005036356.1 mRNA upstream 17012 32932796 ~ 32932850 (+) True LOC118938962
XM_021563088.2 mRNA upstream 469873 32350805 ~ 32479989 (+) False LOC110490011
LOC118938888 mRNA upstream 938117 32008121 ~ 32011745 (+) True LOC118938888
XM_021563084.2 mRNA upstream 975851 31962835 ~ 31974011 (+) True inhbaa
XM_021563083.2 mRNA upstream 1025383 31910786 ~ 31924479 (+) True LOC110490007
XM_021563090.2 mRNA downstream 64047 33014206 ~ 33016957 (+) False LOC110490013
LOC110490956 mRNA downstream 149722 33099881 ~ 33262044 (+) True LOC110490956
XM_021563092.2 mRNA downstream 1326862 34277021 ~ 34325910 (+) False LOC110490016
XM_036944303.1 mRNA downstream 1340679 34290838 ~ 34325910 (+) True LOC110490016
XM_021563093.2 mRNA downstream 1673755 34623914 ~ 34822015 (+) False LOC110490017
TU1464164 other upstream 251826 32687558 ~ 32698036 (+) False G1282302
TU1463280 other upstream 953349 31996167 ~ 31996513 (+) True G1281462
TU1461526 other upstream 2002532 30944171 ~ 30947330 (+) True G1279833
TU1461105 other upstream 2541845 30395867 ~ 30408017 (+) False htr5ab
TU1460985 other upstream 2646443 30303033 ~ 30303419 (+) True G1279349
TU1466288 other downstream 1161648 34111807 ~ 34112271 (+) True G1284354
TU1468667 other downstream 3085424 36035583 ~ 36093396 (+) False G1286648
TU1469571 other downstream 3558919 36509078 ~ 36510512 (+) True G1287489
TU1471681 other downstream 5233277 38183436 ~ 38184003 (+) True G1289491
TU1471908 other downstream 5644721 38594880 ~ 38600241 (+) False G1289710

Expression Profile