RNA id: TU1464926



Basic Information


Item Value
RNA id TU1464926
length 253
lncRNA type intronic
GC content 0.58
exon number 2
gene id G1283041
representative True

Chromosome Information


Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 33148389 ~ 33148910 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGGTCACCTGTCAAGTCACctgtcaggtggtccaccttccctgtggccagtggagaggacatggacgtctcgcttgtcatgccactttactgccagctgttgaccGTTCTCCTGGAattccacctcccctctctgcaTCTTCCTGCATCCGAATGCCGGCATCCCCTTCCTGTTCGACCTGACTGTGCCACGGGCCCCTGTGCTGTTGGAGAGCAGATGCTGGAAGAGTGTGGGACTGCTGTACCAATTGTCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1464922 lncRNA upstream 1165 33147012 ~ 33147224 (+) True G1283037
TU1464910 lncRNA upstream 7671 33140444 ~ 33140718 (+) True G1283025
TU1464905 lncRNA upstream 10211 33137919 ~ 33138178 (+) True G1283020
TU1464749 lncRNA upstream 115581 33032473 ~ 33032808 (+) True G1282871
TU1464729 lncRNA upstream 131421 33016170 ~ 33016968 (+) True LOC110490013
TU1465010 lncRNA downstream 66457 33215367 ~ 33215666 (+) True G1283117
TU1465054 lncRNA downstream 97654 33246564 ~ 33246823 (+) True G1283159
TU1465067 lncRNA downstream 113695 33262605 ~ 33268078 (+) True G1283172
TU1465248 lncRNA downstream 212102 33361012 ~ 33361285 (+) True G1283335
TU1465251 lncRNA downstream 214607 33363517 ~ 33363845 (+) True G1283338
XM_021563090.2 mRNA upstream 131432 33014206 ~ 33016957 (+) False LOC110490013
XR_005036356.1 mRNA upstream 215539 32932796 ~ 32932850 (+) True LOC118938962
XM_021563088.2 mRNA upstream 668400 32350805 ~ 32479989 (+) False LOC110490011
LOC118938888 mRNA upstream 1136644 32008121 ~ 32011745 (+) True LOC118938888
XM_021563084.2 mRNA upstream 1174378 31962835 ~ 31974011 (+) True inhbaa
XM_021563092.2 mRNA downstream 1128111 34277021 ~ 34325910 (+) False LOC110490016
XM_036944303.1 mRNA downstream 1141928 34290838 ~ 34325910 (+) True LOC110490016
XM_021563093.2 mRNA downstream 1475004 34623914 ~ 34822015 (+) False LOC110490017
XM_021563094.2 mRNA downstream 1843513 34992423 ~ 35361339 (+) False LOC110490018
XM_021563095.2 mRNA downstream 1991253 35140163 ~ 35361339 (+) True LOC110490018
TU1464164 other upstream 450353 32687558 ~ 32698036 (+) False G1282302
TU1463280 other upstream 1151876 31996167 ~ 31996513 (+) True G1281462
TU1461526 other upstream 2201059 30944171 ~ 30947330 (+) True G1279833
TU1461105 other upstream 2740372 30395867 ~ 30408017 (+) False htr5ab
TU1460985 other upstream 2844970 30303033 ~ 30303419 (+) True G1279349
TU1466288 other downstream 962897 34111807 ~ 34112271 (+) True G1284354
TU1468667 other downstream 2886673 36035583 ~ 36093396 (+) False G1286648
TU1469571 other downstream 3360168 36509078 ~ 36510512 (+) True G1287489
TU1471681 other downstream 5034526 38183436 ~ 38184003 (+) True G1289491
TU1471908 other downstream 5445970 38594880 ~ 38600241 (+) False G1289710

Expression Profile