RNA id: TU1469574


Basic Information

Item Value
RNA id TU1469574
length 2420
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G1287492
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 36500601 ~ 36503020 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGCAAAGTTATACAAAAGAAGCACACTATGACTGTACGTATGCTCATTTCTAATGATCATACCATGAATACAGACAAACATGTGCCTTTAAACACAGAGTTCCCTTTTTTAGAATACTCAAAAAAATACCTTGCTTTCATTTTAAATACTTGCCgaaaaaaatgagaaaataaaatatGCATTATATGAAATATATAACGGCTGCTTATCAGGTATACTATAGTACCAAATGCAATTATATGCAAATAACTTTCTCTCCATAACATCTAACGCATTTACAAGcaagaacaaacaaaaaaagatgtAAAGACTGTATGAAAATAGAAAATGTCACAGCAAGATGTGCAACAATAGTCTATGTTACAAATACCTTGCAGTACAAAAGGTCTATTACAATGTGCACATAACTATAGTCCACCTGGAACCTAGCCTAGAGTTACAGGGAAGGACAGTGTTGGTAGTGTaaaccatagaattagaataattTTGAAGTAAAATTATTCTTAGAATTAGAATCAGAATCATTCTAGGGTATCAACATTATCCTGTGCTTGATATCAGGAATACAGTATCACAAACTAAAGCTCAAACTGACTTCCTGCTTATGCATGTCTTGAACCAGATCAAGTAACATTCATCCATACCATGTAACTTCAAACAAGGGGTAAAGAAAATAGCACTATGTTTGTAACAAGCAGATAGAAATGGTTTGTTTATGTTAAGTCTTTATACACAGAAAACTGTTTTGGTTCAGAACTAGATCTTTCAACCAGTACTGGTTGATAATGCACAATGACTTGCATTTAGGCTAATGTAATATGCAAGTCAGTTATTTTAACAAAAACATCAAGGTGTATAACAATTAGAAGTCAATTCGAAAGTGAAGAATTCTTTGCCAGCTTACAAGGTCGTTTGATATGTTCAACACTTACATTTATCAGATTCATAAATGTACGTTTTACAGTATATATCCAAAAAGTTAAttcaaaaatatatgtttttgatTTCCAAAATAACTAAAAATGGTCTTATCCATATACAATTAACAATGAATTACAACATGTCCagttgaaatgaagaaattagcTAAGTTACAGTACATCAATTGTACGTGTTGAACACAAATAAACATtgggtacatcccaaatggtaccctatatcctaaatagtgcactaatATTGACTTTTTCCATAGAAACAGAAATGTGTACAAGGCACACTGAGATGTTATGTCTATCATTCATTGCAACACCAAATTCAttaattacaaaaaaatacatattcaCATGGACGTATGTGAGCAAATGAAATTGCACAATTAATTATAAACCTTTTTAACATTTGAAAATATTTGAAAATACACTTTTTTATTTGTACAGTAACAAACTCTAACCTGTCACACCACCCTGACACAGTCTTGACACACTATTGGCAGAGTCATGTTTGGGGGGTGGCACTGTAAATAAAATGTAACGGTCCTCACATTCACCCCTGAGGGATACCACCAATGCAAAACCACCAGCAACTCACAGACAGGTGACACGGGACCAATAACATTACTAAGCAGTGCAACCCCTGGTACTCTTAGTAGCAAATTGTACAGATGTAACACATGGATGTGTAATGAGATCAATTTCTTAGGCCCCAtcccaaatggacccctagaccgtagTGCATCTAAGGGTCGTTCTGGGATTGGGCCTTTAATACACAGGCTCTCAGCTGCTCACTCAAAGCAGCCCCAAGAGAAGTCCTGTGCAACAACAGTATAGCTCTGAGTGACAAACaccacagtgttatatacagttgaagtcagaagtttacatacacttaggttggagtcattaaaacttgtttttcaaccactccacaaatttcttgttaacaaactaaagttttggcaagttggttaggacatctactttgtgcatgacacaagtcattttcccaacaattgtttacagattatttcacttagaattcactgtatcacatttccagtgggtcataagtttacatacacgaagttgactgtgcctttaaacagcttggaaaattccagaaaatgatgtcatggctttagaagcttctgataggctaattgacatcatttgagccaattggaggtgtacctgtggatgtatttcaagacctaccttcaaactcagtgcctctttgtattgacatcatgggaaaatcaaaagaaataagccatgacctcagaaaaaatattgtatacctccacaagtctggatcatccttgggagcaatttacaaacacatgaaggtaccacattcatctatacaaacaatggtacgcaagtataaacacaatgggaccacgcagccatcataccgttcaggaaggagacgcgttcagactcctagagatgaacgtacttaggtacaaaaagtgcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1469567 lncRNA upstream 3919 36496480 ~ 36496682 (+) True G1287487
TU1469342 lncRNA upstream 171880 36325138 ~ 36328721 (+) True G1287285
TU1469332 lncRNA upstream 185092 36314318 ~ 36315509 (+) True G1287276
TU1469319 lncRNA upstream 194417 36305958 ~ 36306184 (+) True G1287264
TU1469118 lncRNA upstream 236521 36261690 ~ 36264080 (+) True LOC110490024
TU1469580 lncRNA downstream 11812 36514832 ~ 36515324 (+) True G1287495
TU1469589 lncRNA downstream 30122 36533142 ~ 36533571 (+) True G1287504
TU1469592 lncRNA downstream 34971 36537991 ~ 36538203 (+) True G1287507
TU1469595 lncRNA downstream 37894 36540914 ~ 36541144 (+) True G1287510
TU1469617 lncRNA downstream 74333 36577353 ~ 36577567 (+) True G1287532
XM_021563110.2 mRNA upstream 236519 36166507 ~ 36264082 (+) False LOC110490024
XM_036944311.1 mRNA upstream 236519 36167104 ~ 36264082 (+) False LOC110490024
XM_021563102.2 mRNA upstream 512352 35897276 ~ 35988249 (+) False LOC110490021
XM_021563104.2 mRNA upstream 513785 35897275 ~ 35986816 (+) False LOC110490021
XM_021563113.2 mRNA downstream 120436 36623456 ~ 36635732 (+) False LOC110490026
XR_002468760.2 mRNA downstream 301986 36805006 ~ 36805955 (+) True LOC110490839
XM_021563120.2 mRNA downstream 366193 36869213 ~ 36901645 (+) False LOC110490032
XM_036944325.1 mRNA downstream 366193 36869213 ~ 36901645 (+) False LOC110490032
XM_021563122.2 mRNA downstream 366194 36869214 ~ 36901645 (+) False LOC110490032
TU1468667 other upstream 407205 36035583 ~ 36093396 (+) False G1286648
TU1466288 other upstream 2388330 34111807 ~ 34112271 (+) True G1284354
TU1464164 other upstream 3802565 32687558 ~ 32698036 (+) False G1282302
TU1463280 other upstream 4504088 31996167 ~ 31996513 (+) True G1281462
TU1461526 other upstream 5553271 30944171 ~ 30947330 (+) True G1279833
TU1469571 other downstream 6058 36509078 ~ 36510512 (+) True G1287489
TU1471681 other downstream 1680416 38183436 ~ 38184003 (+) True G1289491
TU1471908 other downstream 2091860 38594880 ~ 38600241 (+) False G1289710
TU1471909 other downstream 2091860 38594880 ~ 38600241 (+) True G1289710
TU1472790 other downstream 2533985 39037005 ~ 39037659 (+) False G1290549

Expression Profile