RNA id: TU1470465


Basic Information

Item Value
RNA id TU1470465
length 400
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1288319
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 37277521 ~ 37277920 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatagctctgttttgtacatcacatttggctaccaaaaaaaaacgaaaattcagtcctcaaaacgggaacttttttccaaattaactccataatatcgactgaaaacatggcaaacgttgtttagaatcaatcctcaaggtgtttttcacatatctcttcgatgatatatcgttcgtggaagcatggtttctcctctcaatcaaatggaaaaatacttgcacatggctttgcgcaccagtttcgacgcaggacaccaggcggacacttggaaaatgtagtctcttatggtcaatcttccaatgatatgcctacaaatacgtcacaatgctgccgacatcttggggaaacggcagaaggtctaagcttattcctgtcgcattcacagccatataaggagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1470442 lncRNA upstream 15795 37261019 ~ 37261726 (+) True G1288296
TU1470169 lncRNA upstream 222720 37054596 ~ 37054801 (+) True G1288031
TU1470026 lncRNA upstream 322881 36954379 ~ 36954640 (+) True G1287891
TU1469924 lncRNA upstream 366414 36910756 ~ 36911107 (+) True G1287795
TU1469919 lncRNA upstream 382616 36894499 ~ 36894905 (+) True G1287790
TU1470491 lncRNA downstream 13944 37291864 ~ 37292205 (+) True G1288345
TU1470493 lncRNA downstream 19731 37297651 ~ 37297891 (+) True G1288347
TU1470500 lncRNA downstream 23292 37301212 ~ 37301436 (+) True G1288354
TU1470504 lncRNA downstream 28506 37306426 ~ 37306673 (+) True G1288358
TU1470508 lncRNA downstream 31764 37309684 ~ 37310347 (+) True G1288362
XM_021563121.2 mRNA upstream 375457 36869214 ~ 36902064 (+) True LOC110490032
XM_036944325.1 mRNA upstream 375876 36869213 ~ 36901645 (+) False LOC110490032
XM_036944326.1 mRNA downstream 569346 37847266 ~ 37957961 (+) False nrp1a
XM_036944329.1 mRNA downstream 569346 37847266 ~ 37957961 (+) False nrp1a
XM_036944330.1 mRNA downstream 569346 37847266 ~ 37957961 (+) False nrp1a
XR_005036088.1 mRNA downstream 570858 37848778 ~ 37954543 (+) False nrp1a
XM_036944331.1 mRNA downstream 570862 37848782 ~ 37957961 (+) False nrp1a
TU1469571 other upstream 767009 36509078 ~ 36510512 (+) True G1287489
TU1468667 other upstream 1184125 36035583 ~ 36093396 (+) False G1286648
TU1466288 other upstream 3165250 34111807 ~ 34112271 (+) True G1284354
TU1464164 other upstream 4579485 32687558 ~ 32698036 (+) False G1282302
TU1463280 other upstream 5281008 31996167 ~ 31996513 (+) True G1281462
TU1471681 other downstream 905516 38183436 ~ 38184003 (+) True G1289491
TU1471908 other downstream 1316960 38594880 ~ 38600241 (+) False G1289710
TU1471909 other downstream 1316960 38594880 ~ 38600241 (+) True G1289710
TU1472790 other downstream 1759085 39037005 ~ 39037659 (+) False G1290549
TU1472866 other downstream 1848352 39126272 ~ 39127009 (+) True G1290614

Expression Profile