RNA id: TU1471150


Basic Information

Item Value
RNA id TU1471150
length 201
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G1288985
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 37782398 ~ 37782598 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggcctctGGAATATttccccactcctcttcaatggctgtgcaaagttactGGATATTGAAAGGAACTAAATCAAGCTATCGTAgacatcaatccagagcatcccaaacatgctcaatatgtgacatgtctagtgagcatgcaggccatagaagaactgggatatgttcagcttccaggaattttgtacagatccttgcgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1471138 lncRNA upstream 6193 37775996 ~ 37776205 (+) True G1288973
TU1471133 lncRNA upstream 10478 37771652 ~ 37771920 (+) True G1288968
TU1471122 lncRNA upstream 15351 37766843 ~ 37767047 (+) True G1288957
TU1471045 lncRNA upstream 76897 37705293 ~ 37705501 (+) True G1288883
TU1471004 lncRNA upstream 100607 37681548 ~ 37681791 (+) True G1288842
TU1471164 lncRNA downstream 11394 37793992 ~ 37794192 (+) True G1288999
TU1471183 lncRNA downstream 26532 37809130 ~ 37809346 (+) True G1289018
TU1471196 lncRNA downstream 36384 37818982 ~ 37819191 (+) True G1289031
TU1471205 lncRNA downstream 49143 37831741 ~ 37832044 (+) True G1289040
TU1471210 lncRNA downstream 56316 37838914 ~ 37839126 (+) True G1289045
XM_021563121.2 mRNA upstream 880334 36869214 ~ 36902064 (+) True LOC110490032
XM_036944325.1 mRNA upstream 880753 36869213 ~ 36901645 (+) False LOC110490032
XM_036944326.1 mRNA downstream 64668 37847266 ~ 37957961 (+) False nrp1a
XM_036944329.1 mRNA downstream 64668 37847266 ~ 37957961 (+) False nrp1a
XM_036944330.1 mRNA downstream 64668 37847266 ~ 37957961 (+) False nrp1a
XR_005036088.1 mRNA downstream 66180 37848778 ~ 37954543 (+) False nrp1a
XM_036944331.1 mRNA downstream 66184 37848782 ~ 37957961 (+) False nrp1a
TU1469571 other upstream 1271886 36509078 ~ 36510512 (+) True G1287489
TU1468667 other upstream 1689002 36035583 ~ 36093396 (+) False G1286648
TU1466288 other upstream 3670127 34111807 ~ 34112271 (+) True G1284354
TU1464164 other upstream 5084362 32687558 ~ 32698036 (+) False G1282302
TU1463280 other upstream 5785885 31996167 ~ 31996513 (+) True G1281462
TU1471681 other downstream 400838 38183436 ~ 38184003 (+) True G1289491
TU1471908 other downstream 812282 38594880 ~ 38600241 (+) False G1289710
TU1471909 other downstream 812282 38594880 ~ 38600241 (+) True G1289710
TU1472790 other downstream 1254407 39037005 ~ 39037659 (+) False G1290549
TU1472866 other downstream 1343674 39126272 ~ 39127009 (+) True G1290614

Expression Profile