RNA id: TU1471205


Basic Information

Item Value
RNA id TU1471205
length 304
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G1289040
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 37831741 ~ 37832044 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaccaggatggtcaaataataataatcacagacagaacagttgaaactggagcagcagcacggccaggtggactggggacagcaaggagtcatcatgcccggtagtcctgaggcatggtcctaggtctcaggtcctccgagagagagacagagagaattagagagagcatacttaaattcacacaggacaccggataggacaggagaagtactccagatagcaaactgaccctagcccccccgacacataaactactgcagcataaatactggatactgagacaggaggggtcaggagacaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1471196 lncRNA upstream 12550 37818982 ~ 37819191 (+) True G1289031
TU1471183 lncRNA upstream 22395 37809130 ~ 37809346 (+) True G1289018
TU1471164 lncRNA upstream 37549 37793992 ~ 37794192 (+) True G1288999
TU1471150 lncRNA upstream 49143 37782398 ~ 37782598 (+) True G1288985
TU1471138 lncRNA upstream 55536 37775996 ~ 37776205 (+) True G1288973
TU1471210 lncRNA downstream 6870 37838914 ~ 37839126 (+) True G1289045
TU1471215 lncRNA downstream 13718 37845762 ~ 37845962 (+) True G1289050
TU1471329 lncRNA downstream 191396 38023440 ~ 38049365 (+) True G1289148
TU1471598 lncRNA downstream 284923 38116967 ~ 38117233 (+) True G1289408
TU1471622 lncRNA downstream 299236 38131280 ~ 38131862 (+) True G1289432
XM_021563121.2 mRNA upstream 929677 36869214 ~ 36902064 (+) True LOC110490032
XM_036944325.1 mRNA upstream 930096 36869213 ~ 36901645 (+) False LOC110490032
XM_036944326.1 mRNA downstream 15222 37847266 ~ 37957961 (+) False nrp1a
XM_036944329.1 mRNA downstream 15222 37847266 ~ 37957961 (+) False nrp1a
XM_036944330.1 mRNA downstream 15222 37847266 ~ 37957961 (+) False nrp1a
XR_005036088.1 mRNA downstream 16734 37848778 ~ 37954543 (+) False nrp1a
XM_036944331.1 mRNA downstream 16738 37848782 ~ 37957961 (+) False nrp1a
TU1469571 other upstream 1321229 36509078 ~ 36510512 (+) True G1287489
TU1468667 other upstream 1738345 36035583 ~ 36093396 (+) False G1286648
TU1466288 other upstream 3719470 34111807 ~ 34112271 (+) True G1284354
TU1464164 other upstream 5133705 32687558 ~ 32698036 (+) False G1282302
TU1463280 other upstream 5835228 31996167 ~ 31996513 (+) True G1281462
TU1471681 other downstream 351392 38183436 ~ 38184003 (+) True G1289491
TU1471908 other downstream 762836 38594880 ~ 38600241 (+) False G1289710
TU1471909 other downstream 762836 38594880 ~ 38600241 (+) True G1289710
TU1472790 other downstream 1204961 39037005 ~ 39037659 (+) False G1290549
TU1472866 other downstream 1294228 39126272 ~ 39127009 (+) True G1290614

Expression Profile