RNA id: TU1471598


Basic Information

Item Value
RNA id TU1471598
length 267
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1289408
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 38116967 ~ 38117233 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAAAAAACTGCAGTagttctgtaaaaaaaaacaaattgtaCCTCCTCACAGTACGTAACACTACAAGTTCCCATCTTCTTGGTGGGCATCCTGTCGCTCTTGTTGGTCTAGCCGGAGACTTTCGTCAACATCACATCTGATGTTTTCCCTTGTGATGCACCGGGGGGAAAAATCTCCTTGCGTGGTGCAACCATCCCCTGCAATGATCGCCTGTGATGTCCTCACAAGCAGCATTCACGGCGTCTAACAGAGACATCTGATCTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1471329 lncRNA upstream 67602 38023440 ~ 38049365 (+) True G1289148
TU1471215 lncRNA upstream 271005 37845762 ~ 37845962 (+) True G1289050
TU1471210 lncRNA upstream 277841 37838914 ~ 37839126 (+) True G1289045
TU1471205 lncRNA upstream 284923 37831741 ~ 37832044 (+) True G1289040
TU1471196 lncRNA upstream 297776 37818982 ~ 37819191 (+) True G1289031
TU1471622 lncRNA downstream 14047 38131280 ~ 38131862 (+) True G1289432
TU1471629 lncRNA downstream 18394 38135627 ~ 38136087 (+) True G1289439
TU1471664 lncRNA downstream 47354 38164587 ~ 38164806 (+) True G1289474
TU1471677 lncRNA downstream 62595 38179828 ~ 38180128 (+) True G1289487
TU1471679 lncRNA downstream 64502 38181735 ~ 38182325 (+) True G1289489
XM_021563130.2 mRNA upstream 78942 38018211 ~ 38038025 (+) True LOC110490034
XM_021563126.2 mRNA upstream 98979 37974722 ~ 38017988 (+) False LOC110490033
XM_021563128.2 mRNA upstream 98979 37974722 ~ 38017988 (+) True LOC110490033
XM_036944328.1 mRNA upstream 156374 37848784 ~ 37960593 (+) False nrp1a
XM_036944332.1 mRNA upstream 156374 37867558 ~ 37960593 (+) True nrp1a
XM_021563136.2 mRNA downstream 377056 38494289 ~ 38568479 (+) False LOC110490038
XM_021563135.2 mRNA downstream 377058 38494291 ~ 38568479 (+) False LOC110490038
XM_036944343.1 mRNA downstream 459402 38576635 ~ 38580756 (+) False LOC110490039
XM_036944344.1 mRNA downstream 459402 38576635 ~ 38580756 (+) False LOC110490039
XM_036944345.1 mRNA downstream 459402 38576635 ~ 38580756 (+) True LOC110490039
TU1469571 other upstream 1606455 36509078 ~ 36510512 (+) True G1287489
TU1468667 other upstream 2023571 36035583 ~ 36093396 (+) False G1286648
TU1466288 other upstream 4004696 34111807 ~ 34112271 (+) True G1284354
TU1464164 other upstream 5418931 32687558 ~ 32698036 (+) False G1282302
TU1463280 other upstream 6120454 31996167 ~ 31996513 (+) True G1281462
TU1471681 other downstream 66203 38183436 ~ 38184003 (+) True G1289491
TU1471908 other downstream 477647 38594880 ~ 38600241 (+) False G1289710
TU1471909 other downstream 477647 38594880 ~ 38600241 (+) True G1289710
TU1472790 other downstream 919772 39037005 ~ 39037659 (+) False G1290549
TU1472866 other downstream 1009039 39126272 ~ 39127009 (+) True G1290614

Expression Profile