RNA id: TU1471905


Basic Information

Item Value
RNA id TU1471905
length 201
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1289707
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 38592492 ~ 38592692 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaacttttgactggtactgtatgtgaccTGGCGAAAAatcctttccaagccaaaccatatcaaaACCGCAACACACAGTCTACATTGTTgttaccatattagctaaagtaatgtcatagtcaacatagctaatataactaatgtgttagtaaacccgctgAAATCAGTAAGTAGTTCAGCAGTCACACCGTCGGACCCCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1471898 lncRNA upstream 7037 38584514 ~ 38585455 (+) True G1289700
TU1471896 lncRNA upstream 7155 38584514 ~ 38585337 (+) False G1289700
TU1471887 lncRNA upstream 21868 38570346 ~ 38570624 (+) True G1289696
TU1471857 lncRNA upstream 24021 38564749 ~ 38568471 (+) True LOC110490038
TU1471869 lncRNA upstream 115112 38477165 ~ 38477380 (+) True G1289678
TU1471906 lncRNA downstream 671 38593363 ~ 38593574 (+) True G1289708
TU1471939 lncRNA downstream 37734 38630426 ~ 38630655 (+) True G1289740
TU1472060 lncRNA downstream 211940 38804632 ~ 38809711 (+) False G1289855
TU1472061 lncRNA downstream 211940 38804632 ~ 38809711 (+) True G1289855
TU1472081 lncRNA downstream 248079 38840771 ~ 38840986 (+) True G1289875
XM_036944343.1 mRNA upstream 11736 38576635 ~ 38580756 (+) False LOC110490039
XM_036944344.1 mRNA upstream 11736 38576635 ~ 38580756 (+) False LOC110490039
XM_036944345.1 mRNA upstream 11736 38576635 ~ 38580756 (+) True LOC110490039
XM_021563136.2 mRNA upstream 24013 38494289 ~ 38568479 (+) False LOC110490038
LOC110490723 mRNA downstream 262558 38855250 ~ 38856108 (+) True LOC110490723
XM_021564185.2 mRNA downstream 490122 39082814 ~ 39084700 (+) True LOC110490726
XM_036945535.1 mRNA downstream 495381 39088073 ~ 39089636 (+) False LOC110490841
XM_021563144.2 mRNA downstream 954652 39547344 ~ 39589108 (+) False brca2
XM_021563147.2 mRNA downstream 963177 39555869 ~ 39589108 (+) False brca2
TU1471681 other upstream 408489 38183436 ~ 38184003 (+) True G1289491
TU1469571 other upstream 2081980 36509078 ~ 36510512 (+) True G1287489
TU1468667 other upstream 2499096 36035583 ~ 36093396 (+) False G1286648
TU1466288 other upstream 4480221 34111807 ~ 34112271 (+) True G1284354
TU1464164 other upstream 5894456 32687558 ~ 32698036 (+) False G1282302
TU1471908 other downstream 2188 38594880 ~ 38600241 (+) False G1289710
TU1471909 other downstream 2188 38594880 ~ 38600241 (+) True G1289710
TU1472790 other downstream 444313 39037005 ~ 39037659 (+) False G1290549
TU1472866 other downstream 533580 39126272 ~ 39127009 (+) True G1290614
TU1473879 other downstream 1474866 40067558 ~ 40067907 (+) True G1291464

Expression Profile