RNA id: TU1472808


Basic Information

Item Value
RNA id TU1472808
length 402
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G1290559
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 39024349 ~ 39030630 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggtcagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacagccagatcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1472770 lncRNA upstream 36807 38987279 ~ 38987542 (+) True G1290536
TU1472763 lncRNA upstream 53442 38970674 ~ 38970907 (+) True G1290529
TU1472760 lncRNA upstream 56824 38967118 ~ 38967525 (+) True G1290526
TU1472757 lncRNA upstream 58652 38965250 ~ 38965697 (+) True G1290523
TU1472756 lncRNA upstream 59240 38964895 ~ 38965109 (+) True G1290522
TU1472788 lncRNA downstream 6797 39037427 ~ 39061248 (+) True G1290549
TU1472842 lncRNA downstream 56229 39086859 ~ 39088335 (+) False LOC110490841
TU1472843 lncRNA downstream 56229 39086859 ~ 39088224 (+) True LOC110490841
TU1472865 lncRNA downstream 92051 39122681 ~ 39123073 (+) True G1290613
TU1472877 lncRNA downstream 106161 39136791 ~ 39166202 (+) True G1290619
LOC110490723 mRNA upstream 168241 38855250 ~ 38856108 (+) True LOC110490723
XM_036944343.1 mRNA upstream 443593 38576635 ~ 38580756 (+) False LOC110490039
XM_036944344.1 mRNA upstream 443593 38576635 ~ 38580756 (+) False LOC110490039
XM_036944345.1 mRNA upstream 443593 38576635 ~ 38580756 (+) True LOC110490039
XM_021563135.2 mRNA upstream 455870 38494291 ~ 38568479 (+) False LOC110490038
XM_021564185.2 mRNA downstream 52184 39082814 ~ 39084700 (+) True LOC110490726
XM_036945535.1 mRNA downstream 57443 39088073 ~ 39089636 (+) False LOC110490841
XM_021563144.2 mRNA downstream 516714 39547344 ~ 39589108 (+) False brca2
XM_021563147.2 mRNA downstream 525239 39555869 ~ 39589108 (+) False brca2
XM_021563152.2 mRNA downstream 525263 39555893 ~ 39589108 (+) False brca2
TU1471908 other upstream 424108 38594880 ~ 38600241 (+) False G1289710
TU1471909 other upstream 424108 38594880 ~ 38600241 (+) True G1289710
TU1471681 other upstream 840346 38183436 ~ 38184003 (+) True G1289491
TU1469571 other upstream 2513837 36509078 ~ 36510512 (+) True G1287489
TU1468667 other upstream 2930953 36035583 ~ 36093396 (+) False G1286648
TU1472790 other downstream 6375 39037005 ~ 39037659 (+) False G1290549
TU1472866 other downstream 95642 39126272 ~ 39127009 (+) True G1290614
TU1473879 other downstream 1036928 40067558 ~ 40067907 (+) True G1291464
TU1473916 other downstream 1089639 40120269 ~ 40130734 (+) True LOC110490048
TU1475600 other downstream 2552743 41583373 ~ 41588144 (+) False G1293072