RNA id: TU1472908


Basic Information

Item Value
RNA id TU1472908
length 1989
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G1290623
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 39181236 ~ 39184267 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctgtaacttttgatgcgaatatcatttttgcctccaaactccagatttgagtagcagagaagtagatgaagctggaacacttgacatgtcttgtctaagtggttgcaaagtggttttattagctgatttgtgtcaaaaattgctggatttcacttacaaagaatgtcacttggaagtgatgatgtcacaatggggcacttgagtttcttgagagatccaatgaaagcggaaggaggacataaagaggacaagaaagtgaaaaacagatatccaaaattctatacaaacaacttgatcgagaccgttgtgaatttgttgatattggaacggcatttctagcttatacggtgtaggaggagtgtctcctcatgattttggccctgcagcgtctgcaagtatcctagccaacggttccgttttggaatatcagaattgacacagagagctgttagtgacgAGCAGGtgtggggtttcttaaatcgctctccctcgagaacggtagacccaattttaaaagcatttccgcccttgagaagcagagaagtagaggaagattttatgccaaaatatgtttgtgtaactgtttgtttagtggtcaaaacgatagttgttagggaaagtaataaattgccttgctgctggcatgatttacagacacttgaaagtgaggcgacgggttacgaaaacggctataggtacagattggtagccccgatttgaaatccgccctttctatgaagagcagagaagcaggggaagattttagcttgcggaacttttttcctcaaaaatgctccgacagtggtcaaaacgaccgttgtttgggaaggttgaaaaacacgtggtaatgcagttacaaaagcagctgtaccgtaagttccgtatggaatattttgattctgcacacagctatgaatagcagagaagtagacgaatatcccattcactctaacttcttgtctaacttgttgcagtattggtcaaaatagacactgcttgccaaaatgttacagaaactgatgttggtgctgttacttaaactcctgtaacttttgatgcgaatatcatttttgcctccaaactccagatttgagtagcagagaagtagatgaagctggaacacttgacatgtcttgtctaagtggttgcaaagtggttttattagctgatttgtgtcaaaaattgctggatttcacttacaaagaatgtcacttggaagtgatgatgtcacaatggggcacttgagtttcttgagagatccaatgaaagcggaaggaggacataaagaggacaagaaagtgaaaaacagatatccaaaattctatacaaacaacttgatcgagaccgttgcgaatttgttgatattggaacggcatttctagcttatacagtgtaggaggagtgtctcctcatgattttggccctgcagcgtctgcaagtatcctagccaacggttccgttttggaatatcagaattgacacagagagctgttagtgaagagcaggtgtggggtttcttaaatcgctctccatcgagaacggtagacccaattttaaaagcgtttccgcccttgaaaacagagaagtagaggaagattttatgccaaactatgtttgtgtaactgtttgtttagtggtcaaaacgatagttgtttgggaaagtaataaattgccttgctgctggcatgatttacagacacttgaaagtgaggcgatgggttacgaaaacggctataggtacagattggtagccccgatttgaaatccgcccttttctatgaagagcagagaagcaggggaagattttagcttgcggaacttttttcattaaaaatgctcctaaagtggtcaaaacgaccgttgtttgggaaggttgaaaaacacgtggtaatgcagttacaaaaacagctgtaccgtaagttccgtatggaatattttgattctgcacacagctatgaatagcagagaagtagacgaatatcccattc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1472877 lncRNA upstream 15034 39136791 ~ 39166202 (+) True G1290619
TU1472865 lncRNA upstream 58163 39122681 ~ 39123073 (+) True G1290613
TU1472842 lncRNA upstream 92901 39086859 ~ 39088335 (+) False LOC110490841
TU1472843 lncRNA upstream 93012 39086859 ~ 39088224 (+) True LOC110490841
TU1472788 lncRNA upstream 119988 39037427 ~ 39061248 (+) True G1290549
TU1472909 lncRNA downstream 2195 39186462 ~ 39221901 (+) False G1290624
TU1472912 lncRNA downstream 2195 39186462 ~ 39224019 (+) False G1290624
TU1472885 lncRNA downstream 3919 39188186 ~ 39234498 (+) False G1290620
TU1472886 lncRNA downstream 3919 39188186 ~ 39220814 (+) False G1290620
TU1472890 lncRNA downstream 3919 39188186 ~ 39233454 (+) False G1290620
XM_036945535.1 mRNA upstream 91600 39088073 ~ 39089636 (+) False LOC110490841
XM_021564185.2 mRNA upstream 96536 39082814 ~ 39084700 (+) True LOC110490726
LOC110490723 mRNA upstream 325128 38855250 ~ 38856108 (+) True LOC110490723
XM_036944344.1 mRNA upstream 600480 38576635 ~ 38580756 (+) False LOC110490039
XM_021563144.2 mRNA downstream 363077 39547344 ~ 39589108 (+) False brca2
XM_021563147.2 mRNA downstream 371602 39555869 ~ 39589108 (+) False brca2
XM_021563152.2 mRNA downstream 371626 39555893 ~ 39589108 (+) False brca2
XM_021563145.2 mRNA downstream 371926 39556193 ~ 39589108 (+) False brca2
XM_021563148.2 mRNA downstream 371926 39556193 ~ 39589108 (+) False brca2
TU1472866 other upstream 54227 39126272 ~ 39127009 (+) True G1290614
TU1472790 other upstream 143577 39037005 ~ 39037659 (+) False G1290549
TU1471908 other upstream 580995 38594880 ~ 38600241 (+) False G1289710
TU1471909 other upstream 580995 38594880 ~ 38600241 (+) True G1289710
TU1471681 other upstream 997233 38183436 ~ 38184003 (+) True G1289491
TU1473879 other downstream 883291 40067558 ~ 40067907 (+) True G1291464
TU1473916 other downstream 936002 40120269 ~ 40130734 (+) True LOC110490048
TU1475600 other downstream 2399106 41583373 ~ 41588144 (+) False G1293072
TU1475602 other downstream 2399106 41583373 ~ 41588087 (+) True G1293072
TU1475855 other downstream 2724767 41909034 ~ 41909611 (+) True G1293295

Expression Profile