RNA id: TU1473206


Basic Information

Item Value
RNA id TU1473206
length 204
lncRNA type intronic
GC content 0.33
exon number 1
gene id G1290868
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 39829098 ~ 39829301 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaggtaaaaggtttatgtttctgtctccatatgatatggtaaatatatccattgcaaaaaaaatctacatttaaatggaattaatattaatttgcatatatttccgttacTTCCCAAATATTCCTATGGgatgtttccacctctgaatattccccaaactGTGCAAAcctagtctgaatactttctgaatgcactgaacgctgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1473205 lncRNA upstream 1414 39827458 ~ 39827684 (+) True G1290867
TU1473202 lncRNA upstream 3933 39824966 ~ 39825165 (+) True G1290864
TU1473194 lncRNA upstream 13840 39814924 ~ 39815258 (+) True G1290856
TU1473192 lncRNA upstream 18060 39810837 ~ 39811038 (+) True G1290854
TU1473073 lncRNA upstream 207223 39621631 ~ 39621875 (+) True G1290749
TU1473209 lncRNA downstream 2024 39831325 ~ 39831613 (+) True G1290871
TU1473212 lncRNA downstream 4187 39833488 ~ 39833764 (+) True G1290874
TU1473218 lncRNA downstream 10647 39839948 ~ 39840150 (+) True G1290880
TU1473183 lncRNA downstream 16412 39845713 ~ 39929223 (+) True LOC110490050
TU1473221 lncRNA downstream 40532 39869833 ~ 39874630 (+) True G1290883
XM_021563169.2 mRNA upstream 145054 39649370 ~ 39684044 (+) False LOC110490049
XM_036944352.1 mRNA upstream 145054 39649370 ~ 39684044 (+) False LOC110490049
XM_036944354.1 mRNA upstream 145054 39649370 ~ 39684044 (+) False LOC110490049
XM_036944353.1 mRNA upstream 145054 39649379 ~ 39684044 (+) True LOC110490049
XM_021563151.2 mRNA upstream 239990 39557340 ~ 39589108 (+) False brca2
XM_021563172.2 mRNA downstream 83141 39912442 ~ 39929225 (+) False LOC110490050
XM_021563178.2 mRNA downstream 107585 39936886 ~ 40053076 (+) False LOC110490053
XM_021563177.2 mRNA downstream 107678 39936979 ~ 40053076 (+) False LOC110490053
XM_021563175.2 mRNA downstream 155239 39984540 ~ 40053076 (+) False LOC110490053
XM_021563176.2 mRNA downstream 163635 39992936 ~ 40053076 (+) False LOC110490053
TU1472866 other upstream 702089 39126272 ~ 39127009 (+) True G1290614
TU1472790 other upstream 791439 39037005 ~ 39037659 (+) False G1290549
TU1471908 other upstream 1228857 38594880 ~ 38600241 (+) False G1289710
TU1471909 other upstream 1228857 38594880 ~ 38600241 (+) True G1289710
TU1471681 other upstream 1645095 38183436 ~ 38184003 (+) True G1289491
TU1473879 other downstream 238257 40067558 ~ 40067907 (+) True G1291464
TU1473916 other downstream 290968 40120269 ~ 40130734 (+) True LOC110490048
TU1475600 other downstream 1754072 41583373 ~ 41588144 (+) False G1293072
TU1475602 other downstream 1754072 41583373 ~ 41588087 (+) True G1293072
TU1475855 other downstream 2079733 41909034 ~ 41909611 (+) True G1293295

Expression Profile