RNA id: TU1474659


Basic Information

Item Value
RNA id TU1474659
length 1232
lncRNA type antisense_over
GC content 0.59
exon number 1
gene id G1292202
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 40673669 ~ 40674900 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTTCATCCTCGACTCGTCTGCTTTCTGAAAACTAATGCTGGCATAGGCACGCAGGTCCTCTGGGGCACTCCCACCTTGCGTGTCCCTGGCTCTGGCCGGGAGGGAACTCCACTCTGGGAGGTTCTGGTCCTGAGCCAGGTCCAGGTCGATGTAGTTCAGCCTGTTCTGGTTCTGTCCGTTAGAGCTGGGCCCCAATGGGCTTTCTCTCCTCCCGTTGGCAAATAATGGGGATTCTCCCGGCTTCAGCCACACATTCTCGAAAGAGGTGGAGCTGTGACGTTTCACTTCCTCCACGGAGGGCGAGGCGGCGCTGACCGGGACTCCTGTGGAGGAGAAGGTCTCGGAGCTGTGCCGGCGCCGGCCCTGCTGGTCGGCACGGATCAATTTAGCTTCCTGGTTCCAGATGAAACTGGAGTTAACCCTGGTGAAAGCACTCAGCCCAGAGAGAGGGCCCATTAGTCCTAAGGGCACGGCACTGGGACCCGCACCCAGCACAGACAGGTCCTGGCTTGGAGGGGACACAGAGAAGGGGGTGACATCAATGGTCGACATCGGAGCGTTTAGAATCATCTGTGTGTCAGAGTAGTCCGTCTGTGTGCTGCTGTAGTCCCGTCTACAGAGGTTCTCACAGgggattacagaggaggagggagcCACAGGTGCCACTATAGCATAGCCATCTGTGCAGGAGGCTAGGGGTTTGGCTTCCCAGTTGGGAATGCCCCTGCCCTGAGCACCCAGGTGCATGTTCATGTAGTCTGAGGAAATCTCTGCTGGCCTCTCTGGGCCACTACCTGGGAACACAGGGGAGAAGTGAGTGGCCAAGCCGGCTGAGAAGGCCTTGTCGTTGAACTCTATGTTGACATACTCCCCGGGGCTCTTGGGATCTGTAGGGAAGGGGCACTCATGGGTGCGAGGCAGGGTGCTGGCTTTGTTGCCCTCCAGAGAGAGGTGCGTGGGCCTGGCCAGCCTGCTGTCCACGTCAGCTCTCTTGGGCTTGACCACGGGCTGAATACTgtagccctgccctgtcctggtaGAGTCCCCGAAGGCCAGGTGTCCAGAGCTGAGTGAAAGGTGCAGGGGGTTCTGGTCCAGCTTCCTGTGGCTGTGTTCAAAAGAGTGAGGCAAGGAAAAGTAGGCGTATATGGACTTGGGTGGACCCTCTACCAGGTTGCTGTAGCAGTCTGGCGGCGTGCTAGTCATGGAGCAGCTCGCCGGTGACATGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1474649 lncRNA upstream 13733 40659673 ~ 40659936 (+) True G1292192
TU1474642 lncRNA upstream 20815 40652512 ~ 40652854 (+) True G1292185
TU1474641 lncRNA upstream 23086 40650376 ~ 40650583 (+) True G1292184
TU1474639 lncRNA upstream 25782 40647526 ~ 40647887 (+) True G1292182
TU1474638 lncRNA upstream 26759 40646657 ~ 40646910 (+) True G1292181
TU1474665 lncRNA downstream 11031 40685931 ~ 40686247 (+) True G1292208
TU1474669 lncRNA downstream 18643 40693543 ~ 40693766 (+) True G1292212
TU1474670 lncRNA downstream 19900 40694800 ~ 40696802 (+) True G1292213
TU1474671 lncRNA downstream 23339 40698239 ~ 40698451 (+) True G1292214
TU1474673 lncRNA downstream 26408 40701308 ~ 40701593 (+) True G1292216
XM_021563167.2 mRNA upstream 541069 40089464 ~ 40132600 (+) False LOC110490048
XM_021563168.2 mRNA upstream 550070 40089475 ~ 40123599 (+) False LOC110490048
XM_021563177.2 mRNA upstream 620593 39936979 ~ 40053076 (+) False LOC110490053
XM_021563198.2 mRNA downstream 355476 41030376 ~ 41088538 (+) False tfdp2
XM_021563196.2 mRNA downstream 355477 41030377 ~ 41088538 (+) False tfdp2
XM_021563197.2 mRNA downstream 355479 41030379 ~ 41088538 (+) False tfdp2
XM_036944358.1 mRNA downstream 369017 41043917 ~ 41087542 (+) False tfdp2
XM_021563194.2 mRNA downstream 369027 41043927 ~ 41088538 (+) False tfdp2
TU1473916 other upstream 542935 40120269 ~ 40130734 (+) True LOC110490048
TU1473879 other upstream 605762 40067558 ~ 40067907 (+) True G1291464
TU1472866 other upstream 1546660 39126272 ~ 39127009 (+) True G1290614
TU1472790 other upstream 1636010 39037005 ~ 39037659 (+) False G1290549
TU1471909 other upstream 2073428 38594880 ~ 38600241 (+) True G1289710
TU1475600 other downstream 908473 41583373 ~ 41588144 (+) False G1293072
TU1475602 other downstream 908473 41583373 ~ 41588087 (+) True G1293072
TU1475855 other downstream 1234134 41909034 ~ 41909611 (+) True G1293295
TU1476968 other downstream 2089953 42764853 ~ 42767937 (+) True G1294319
TU1478092 other downstream 2922024 43596924 ~ 43597464 (+) True G1295348

Expression Profile