RNA id: TCONS_00044246


Basic Information

Item Value
RNA id TCONS_00044246
length 4701
RNA type mRNA
GC content 0.53
exon number 22
gene id XLOC_022431
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 28954137 ~ 29004753 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCATAGCAAGTTTTCAATCGcaatttttctttctcttttgtcTTTTTCATCAACAGCTGAGAGGAGTTTATGCACTGAAAAGACCTCAGGAAAATCCACGATGGCCGCCAAAAGGAAAGGTGGCCTAAAACTGAATGCGATCTGTGCCAAGCTTAGCCGGCAGGTGGTATACGACGGCAGTTCCCAGAATGCCGAGGGAGACTCAGACCTAGGCGACAGGCCTGAAAGTGACTTCCCAGAGGGCCTGACTCTCACTCAGAGCCTGGAGGAGGACCAGAAGCGGCGCGAGGCCATTGAGAAGTGGGTGAATGGAGAGTACGGAGAGGATCCGCAGTGTTTAGAAGGGGTGGAGCACAGAGTACTCAAACCCAACAACGGAGAAGATGGTCCCCCTGAGGGTGTGTACATGGTACAGCCCAAAGGCTGCAGCGATGAAGAAGACAACGCAGAAGAAGCAGACACCATGCCCGGCTCTCACGAGGGCAGTTATCACGAGGACTCAGAAGGCAGTCCACGCAAAGATGACAATTCCTCTGCACTACGCGACTACGCCGCCAACACCATGAATGAGTTCCTAAACATGTTTGGCTATGATGACCAGCAGGTTCGGGATGAGCTGGCCAAGAAGATCAGCTTTGAGAAGCTGAAAGCAGCTACCTCAGATCCCTCCTCCCTGAGCAGCGAGGAGGCCACCCGTCGAGCTCGATTCTCCAAGTATGAGGAGTACATCCGCAAGCTAAAGGCCGGGGAGACACTGCCCTGGCCTGTGCACACCAAGCCTGAAGTGCTCAACTCCAAAATGACATTGACACCAGAAAAGAGCGCTGCCCTCATCCAGCCGACCCTCACCGCAGGGTCAGAGGGACAGATATTTCCCTCACTTAACCCAGCCCCAACCAACCAGTCACACATACAGAACTTGGCATCCCGTGCATCCAAGTATGATTACTTCATCCAGAAGCTGAAAATGGGCGAGAGTCTCAGAGAGCAAAATGGCAATTCCTACAAGCGGCCCTCCAAGTATGACTTGGAGAACGTCAAATTCCTGCATCTCTTTAAACCAGGAGAGGGCAACCCTGATATGGGTGGCGCCATCGCGTTTAAGACCGGAAAAGTCGGCAGACCGTCAAAGTATGATATACGAAACATACAAAAGCTTATTCCTGGGAAAGTCGATCCTCCGGTCCTGTCTACTGCTCCCGCTGGAGTCGTGGGACCTCCTGGGTTGCCCATGGACCAGGAGGGACACCTAGGTTTTAACACTGACTTCATGAAGTCCAGCTTCTCTAAGACTGACTCCATCACTACTGGAACCGTTTCCTCAGTCAAGAATGGCCTTCCTCCAGAGAAACCTGCCACAGAGGACGTCAACGTGTACCAGAAATATATCGCTAGGTTCTCTGGGAGCCAACACTGTGGCCATGTGCACTGTGCATACCAGTACAGAGAGCATTATCACTGCATGGACCCCGAATGTAACTATCAGAGATTCACCAGTAAGCAGGATGTGATAAGGCATTATAACATGCATAAGAAGAGGGACAACTCCCTGCAGCACGGATTCATGCGCTTCAGCCCTTTGGATGACTGTAGTGTGTACTACCATGGCTGTCATCTCAACGGCAAGAGTACCCACTACCACTGTATGCAGGTGGCCTGCAACAAGGTGTACACAAGCACTTCTGATGTCATGACTCATGAGAACTTCCATAAGAAAAATGCACAGCTGATCAATGATGGCTTCCAGAGGTTTCGTGCCGTTGAAGATTGCGGGACGGTCGGGTGCCAGTTCTACGCACAGAAGACCACCCACTTCCACTGCAGGCGTCCAGGCTGTACCTTCACCTTCAAGAACAAGTGTGACATCGAGAAGCACAAGAGCTATCACATCAAAGACGATGCTTATGCCAAGGACGGCTTCAAGAAGTTTTACAAATACGAGGAGTGCAAGTATGAAGGCTGTGTCTACAGCAAGGCCACCAACCATTTCCACTGCATACGCCAAGGCTGCGGCTTCACCTTTACCTCCACCAGCCAGATGACCTCACACAAGCGCAAGCACGAGCGCCGCCACATTCGCTCCTCAGGCGTCCTTGGCCTCACTTCCTCCTTCCTGTTGCCCAAAGAGGAGCAGGATGAGTCCAGCAATGATGACCTCATGGACTACTCTGCCATCAGCAGCAAGAACTCTAGCTTAAGTGCTTCTCCGACGACCCAGCAATCCTCCACCATCCCGCATCTGCTCCCCACTCCCACCACCACCATCGTCAAGCCCACCGCTGCTCTGCCTCCAGCTAGCCGCATTTCGACGCTGCTGTCCCAGGCCCTGCCCAGCAATGTACCCATGGCCCTGGCACTTTCTAACAGCGCACTGGCAGGTGCTTCCAATGCTTTCTTTCCCCTCATTCCCAGAATGCCCATGCCGCTCCCACCCTCTGCCGCTGGTCTAATCTCTGCTGCCACGTCTGTGGCCCACTCCATGCCCAGCGATTCTCTGCCCCAGACCTCAACTCCAACTGGGGACCTGGCTGCTGCTACTGTTGCTTCCACCCCAACTTCCTTCGCTGCGTCATCAATTATGGAGAAGATGTCAGCTAGCAAGGGTCTGATATCGCCCATGATGGCCCGACTGGCAGCCGCTGCCCTGAAGCCCTCCGGTAACCCTGATGCAGGTGACGCTGAATCAAACGGACACCCTGCGCCGGGAAATACATCTCTTTTATCCTCACTTATGAATAAGGTAAGATTCATCCATCAAACGCTTTTCATCCCAAGACAAATTAAAACTGACCTTAATTTACCAGCAATACACATCTTGAactttctctctttctcacatCTGTACAGGTATGACATTGATGATTTCTGTGAAGCCCATTGTGATTTCTTGCACAAGATCCATTTTCATTGCCTGGTGGAGGACTGTGGGGCTCTCTTCAGCACGGTGGACGGAGCCATCAAACACGCCAACTTCCACTTCAGAGCCAACCTGAAGGTTAAATCGGAGCCCCCTTTCAACGAGAGCAAGGAATCCAACGATAGCGGACCTAATCAAATGTCTGCCCCTATTTCCATGGCCAAGACGCCCCCTGTGGAGGTGCCCAGTCTGGCTGTCTCGTCCCCTTCTTTCCAAGCCTGGAAACAGCTAGCCGGTTCGATCCCCCAACTTCCTGCCTCCATGCCCAGTATGCCAGCCACTTCCCCTCTAGCCACCACGTCGCTGGAAAATGCCAAGCCTCAGGTCAAGCCTGGCTTCCTGCAGTTTCAGGACAATGATCCTTGTCTGGCCACCGACTGCAAATACTCCAATAAGTTCCACTTCCACTGTCTGTTTGGAAATTGCAAATATGTGTGTAAGACATCAGGGAAGGCTGAGTCGCATTGCCTGGACCACATTAACCCCAACAACAACCTGGTGAATGTGCGAGACCAGTTCTCCTATTATTCTCTGCAATGCCTTTGTCCTAACCAGCACTGTGAGTTTCGCATGAGGGGCCATTATCATTGTCTGAGACCCGGCTGTTATTTTGTCACCAATATCACCACCAAACTGCCCTGGCACATCAAGAAGCATGAGAAAGCAGAGAGGCGTGCCGCCAACGGCTTCAAATACTTTACCAAAAGAGAAGAATGTGGCAGACATGGGTGCAAATACAACCAAGTTAACAGCCATTTCCATTGTATCCGTGAGGGCTGTCAGTTCTCCTTCCTGCTCAAGCATCAGATGACCTCCCATGCCCGCAAACACATGCGGAGGATGCTGGGTAAAAACTTCGACAGAGTTCCTTCCCAGGACAACGATGACTACATGGATTATACTGCTGGAGGTAGCCCACTGGGCCTCTCCTCAGAATCCTCCAACCAAGACCGCAGTTGTACCAGCACCCCCGTAGGAAACGACAGTTCGCCAGCAGGTAACACCATCTCTATCCCTACGGCAACTGGAGCTAAGAAGCGCTTCTGGATCATCGAAGACATGTCACCCTTCGGCAAGCGTCGCAAAACCGCTTCGTCTCGCAAGATGCTGGATGAAGGCATGATGCTGGAAGGCTTCCGACGCTATGATCTCTATGAGGACTGCAAGGATACGGCCTGCCAGTTCTCCCTGAAGGTCACCCACTATCACTGCACACGGGAGAACTGCGGCTACAAGTTCTGCGGCCGCACTCACATGTACAAGCATGCCCAGCACCACGACCGCGTGGACAACCTGGTCCTAGATGACTTCAAGCGCTTCAAGTCCTCACTGTGCTGTAACTTCCCTGATTGCCAGTTCTCTGGAAACAGCACCCATTTCCACTGCTTGCGCTGTGGCTTCCGCTGTACAGACAGCACCAAGGTGACGGCGCATCGCAAGCATCATGGCAAGCAGGATGTGATCAGTGCTGCCGGATTCTGTCAGTTCAGTTCTAGCGTGGACTGCGAGGTGGCTGACTGCAAGTACAAGCTCAAGTGTTCACACTTCCACTGCACTTACCCAGAGTGCAAGCACACAGTGGTGGGCATGTCCCAAATGGATTCCCACAAGCGCAAGCATGAGAAGCAGGAGAGGGGTGAGCTGCCTTCCGTTTCCCCCAACCAGGATGGCAACCAccatcatcaccaccaccaccaccaccaccatgcAGcacccagaggaaacccacaccaacacggggagaacatgcaaactccacacagaaacgccagctggacttga

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0045664 regulation of neuron differentiation biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-060130-108 Predicted to enable metal ion binding activity. Predicted to be involved in regulation of neuron differentiation and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including adaxial cell; cardiovascular system; hindbrain neural plate; musculature system; and nervous system. Orthologous to human CASZ1 (castor zinc finger 1).

Ensembl:

ensembl_id ENSDART00000002812

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045027 lncRNA downstream 500434 28433175 ~ 28453703 (-) True XLOC_022427
TCONS_00044237 lncRNA downstream 727418 28190529 ~ 28226719 (-) False XLOC_022424
TCONS_00045026 lncRNA downstream 1158214 27788369 ~ 27795923 (-) True XLOC_022417
TCONS_00045025 lncRNA downstream 1181765 27770481 ~ 27772372 (-) True XLOC_022416
TCONS_00045023 lncRNA downstream 1224683 27727295 ~ 27729454 (-) True XLOC_022415
TCONS_00045028 lncRNA upstream 181099 29185852 ~ 29257716 (-) True XLOC_022432
TCONS_00044250 lncRNA upstream 329100 29333853 ~ 29358214 (-) False XLOC_022433
TCONS_00044739 lncRNA upstream 350864 29355617 ~ 29357759 (-) True XLOC_022433
TCONS_00044740 lncRNA upstream 670242 29674995 ~ 29706359 (-) True XLOC_022440
TCONS_00044741 lncRNA upstream 816448 29821201 ~ 29822565 (-) False XLOC_022443
TCONS_00044245 mRNA downstream 145657 28803007 ~ 28808480 (-) True XLOC_022430
TCONS_00044244 mRNA downstream 261556 28685266 ~ 28692581 (-) True XLOC_022429
TCONS_00044242 mRNA downstream 466984 28482780 ~ 28487153 (-) False XLOC_022428
TCONS_00044243 mRNA downstream 467244 28483277 ~ 28486893 (-) True XLOC_022428
TCONS_00044241 mRNA downstream 530915 28399313 ~ 28423222 (-) True XLOC_022426
TCONS_00044251 mRNA upstream 370923 29375676 ~ 29376859 (-) False XLOC_022434
TCONS_00044253 mRNA upstream 376688 29381441 ~ 29394505 (-) True XLOC_022435
TCONS_00044254 mRNA upstream 391429 29396182 ~ 29505463 (-) False XLOC_022436
TCONS_00044255 mRNA upstream 391433 29396186 ~ 29502287 (-) False XLOC_022436
TCONS_00044256 mRNA upstream 435054 29439807 ~ 29502287 (-) False XLOC_022436
TCONS_00044238 other downstream 730894 28200960 ~ 28223243 (-) True XLOC_022424
TCONS_00044236 other downstream 731178 28190529 ~ 28222959 (-) False XLOC_022424
TCONS_00044226 other downstream 1131359 27809068 ~ 27822778 (-) True XLOC_022418
TCONS_00044212 other downstream 1373845 27580164 ~ 27580292 (-) True XLOC_022408
TCONS_00044197 other downstream 1718483 27206719 ~ 27235654 (-) False XLOC_022399
TCONS_00044248 other upstream 181099 29185852 ~ 29257404 (-) False XLOC_022432
TCONS_00044249 other upstream 181099 29185852 ~ 29257561 (-) False XLOC_022432
TCONS_00044252 other upstream 370925 29375678 ~ 29376841 (-) True XLOC_022434
TCONS_00044280 other upstream 1037736 30042489 ~ 30045653 (-) True XLOC_022450
TCONS_00044283 other upstream 1512446 30517199 ~ 30698676 (-) False XLOC_022453

Expression Profile

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