RNA id: TU1475542


Basic Information

Item Value
RNA id TU1475542
length 524
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1293019
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41510187 ~ 41510710 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atccaattgattttgatgtctactttttcatttttttaatctacatttagctctttcttcatttgtttcttgctgttacagctaatgaagattgaatctgaaagactcagcagatgaattacagagtatttgaactgaaacctggtcaactgctttgaagatagctatgctcacaagtataccaccaacactcaagtgattcactgtggcctggcaccatcgacctgtcaatccaaatcctcaccgtcattgctggcgactgcaaaaaaACACCTTAGATAaagtggctcgttggtctaggggtatgattctagCTTCGGGTGCGAGAGATCCCatgttcaaatcccggatgaccCCATTTGTAGAGCTTTTAACAATCAGAGataggcggttcttgggcaactggttggagtgctgaacgaggtggatgagtgataaaggcaatggactgctaatccattgtgctctgcactcgtgggttcaacatcgcacaacatttattcatttcttccttggttaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1475510 lncRNA upstream 65404 41444226 ~ 41444783 (+) True trnap-cgg-152
TU1475503 lncRNA upstream 90763 41419008 ~ 41419424 (+) True trnap-cgg-127
TU1475501 lncRNA upstream 101098 41408749 ~ 41409089 (+) True trnap-cgg-116
TU1475500 lncRNA upstream 102055 41407848 ~ 41408132 (+) True trnap-cgg-115
TU1475499 lncRNA upstream 102669 41406973 ~ 41407518 (+) True trnap-cgg-114
TU1475543 lncRNA downstream 1365 41512075 ~ 41512941 (+) True G1293020
TU1475548 lncRNA downstream 17760 41528470 ~ 41529058 (+) True G1293025
TU1475550 lncRNA downstream 18457 41529167 ~ 41529827 (+) True G1293027
TU1475554 lncRNA downstream 22570 41533280 ~ 41533826 (+) True trnap-cgg-205
TU1475568 lncRNA downstream 34188 41544898 ~ 41545622 (+) True G1293045
trnap-cgg-201 mRNA upstream 2404 41507712 ~ 41507783 (+) True trnap-cgg-201
trnap-cgg-200 mRNA upstream 3318 41506798 ~ 41506869 (+) True trnap-cgg-200
trnap-cgg-199 mRNA upstream 17954 41492162 ~ 41492233 (+) True trnap-cgg-199
trnap-cgg-198 mRNA upstream 19784 41490332 ~ 41490403 (+) True trnap-cgg-198
trnap-cgg-197 mRNA upstream 20699 41489417 ~ 41489488 (+) True trnap-cgg-197
trnap-cgg-202 mRNA downstream 5235 41515945 ~ 41516016 (+) True trnap-cgg-202
trnap-cgg-203 mRNA downstream 14252 41524962 ~ 41525033 (+) True trnap-cgg-203
trnap-cgg-204 mRNA downstream 16920 41527630 ~ 41527701 (+) True trnap-cgg-204
trnap-cgg-205 mRNA downstream 23060 41533770 ~ 41533841 (+) False trnap-cgg-205
trnap-cgg-206 mRNA downstream 24911 41535621 ~ 41535692 (+) True trnap-cgg-206
TU1473916 other upstream 1379453 40120269 ~ 40130734 (+) True LOC110490048
TU1473879 other upstream 1442280 40067558 ~ 40067907 (+) True G1291464
TU1472866 other upstream 2383178 39126272 ~ 39127009 (+) True G1290614
TU1472790 other upstream 2472528 39037005 ~ 39037659 (+) False G1290549
TU1471909 other upstream 2909946 38594880 ~ 38600241 (+) True G1289710
TU1475600 other downstream 72663 41583373 ~ 41588144 (+) False G1293072
TU1475602 other downstream 72663 41583373 ~ 41588087 (+) True G1293072
TU1475855 other downstream 398324 41909034 ~ 41909611 (+) True G1293295
TU1476968 other downstream 1254143 42764853 ~ 42767937 (+) True G1294319
TU1478092 other downstream 2086214 43596924 ~ 43597464 (+) True G1295348

Expression Profile