RNA id: TU1475550



Basic Information


Item Value
RNA id TU1475550
length 661
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1293027
representative True

Chromosome Information


Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41529167 ~ 41529827 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


acatttagctctttcttcatttgtttcttgctgttacagctaatgaagattgaatctgaaagactcagcagatgaattacagagtatttgaactgaaacctgatcAACTGCtttgaagatagctatgctcaaaaagtataccaccaacactcacttgattcactgtggcctggcaccatcgacctgtcaatccaaatcctcaccgtcattgctggcgactgcaaaaaaTACCATAGAGAaagtggctcgttggtctaggggtatgattctcgcttcgggtgcgagaggtctcGGGATGAGTGCTGaatgaggtggatgagtgataaaggcaatggactgctaatccattgtgctctgcactcgtgggttcaacatcgcacaacatttattcatttcttccttggttaaaaaatctgtcattttaaccggtacatagattaccttcagacgagtcccgtgacccttgtggaggtcgtagagcaaaactgagaaggacattgtgtttgtgagagtctcccctttccatgtaatggtcaaacgattttgtaggtcaaaccggtcaggaagctacagccatttgtatgagaagacaaaTTTTCAGGGTTATGTCATGTTTTGactaacattgctctcgctctgccgcatttcaccaaagatgcag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1475548 lncRNA upstream 109 41528470 ~ 41529058 (+) True G1293025
TU1475543 lncRNA upstream 16226 41512075 ~ 41512941 (+) True G1293020
TU1475542 lncRNA upstream 18457 41510187 ~ 41510710 (+) True G1293019
TU1475510 lncRNA upstream 84384 41444226 ~ 41444783 (+) True trnap-cgg-152
TU1475503 lncRNA upstream 109743 41419008 ~ 41419424 (+) True trnap-cgg-127
TU1475554 lncRNA downstream 3453 41533280 ~ 41533826 (+) True trnap-cgg-205
TU1475568 lncRNA downstream 15071 41544898 ~ 41545622 (+) True G1293045
TU1475580 lncRNA downstream 23707 41553534 ~ 41553948 (+) True G1293056
TU1475614 lncRNA downstream 48002 41577829 ~ 41578216 (+) True G1293084
TU1475599 lncRNA downstream 53389 41583216 ~ 41588144 (+) False G1293072
trnap-cgg-204 mRNA upstream 1466 41527630 ~ 41527701 (+) True trnap-cgg-204
trnap-cgg-203 mRNA upstream 4134 41524962 ~ 41525033 (+) True trnap-cgg-203
trnap-cgg-202 mRNA upstream 13151 41515945 ~ 41516016 (+) True trnap-cgg-202
trnap-cgg-201 mRNA upstream 21384 41507712 ~ 41507783 (+) True trnap-cgg-201
trnap-cgg-200 mRNA upstream 22298 41506798 ~ 41506869 (+) True trnap-cgg-200
trnap-cgg-205 mRNA downstream 3943 41533770 ~ 41533841 (+) False trnap-cgg-205
trnap-cgg-206 mRNA downstream 5794 41535621 ~ 41535692 (+) True trnap-cgg-206
trnap-cgg-207 mRNA downstream 7597 41537424 ~ 41537495 (+) True trnap-cgg-207
XM_021563213.2 mRNA downstream 27821 41557648 ~ 41567851 (+) False LOC110490071
XM_021563212.2 mRNA downstream 27839 41557666 ~ 41567851 (+) True LOC110490071
TU1473916 other upstream 1398433 40120269 ~ 40130734 (+) True LOC110490048
TU1473879 other upstream 1461260 40067558 ~ 40067907 (+) True G1291464
TU1472866 other upstream 2402158 39126272 ~ 39127009 (+) True G1290614
TU1472790 other upstream 2491508 39037005 ~ 39037659 (+) False G1290549
TU1471909 other upstream 2928926 38594880 ~ 38600241 (+) True G1289710
TU1475600 other downstream 53546 41583373 ~ 41588144 (+) False G1293072
TU1475602 other downstream 53546 41583373 ~ 41588087 (+) True G1293072
TU1475855 other downstream 379207 41909034 ~ 41909611 (+) True G1293295
TU1476968 other downstream 1235026 42764853 ~ 42767937 (+) True G1294319
TU1478092 other downstream 2067097 43596924 ~ 43597464 (+) True G1295348

Expression Profile