RNA id: TU1475707


Basic Information

Item Value
RNA id TU1475707
length 1927
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G1293169
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41733476 ~ 41735494 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTaggtttcagtgtgtgtgagactgcTTCTTACCCTGGCTTATGCACAATCTCCCTCAGTACTCTTACTGCATCATCACTGTGTGATACTCAGCACGTATCAGTGTGTAGGTATCAGTGGGTaggtttcagtgtgtgtgagactgcTCCTTACCCTGGCTTATTCACAATCTCCCTCAGTACTCTTACTGCATCATCACTGTGTGATACTCAGCACGTATCAGTGTGTaggtttcagtgtgtgtgagactgcTCCTTACCCTGGCTTATTCACAATCTCCCTCAGTACTCTTACTGCATCATCACTGTGTGATACTCAGCACGTATCAGTGTGTagGTTTCAGTGTGAGAGAGACTGCTCCTTACCCTGGCTTATTCACAATCTCCCTCAGTACTCTTACTGCATCATCACTGTGTGATACTCAGTAGGTTTCAGTGTGTAGGCttcagtgtgtgagagactgcTCCTTACCCTGGTTTATGGACAATCTCCCTCAGGACTCTGACTGCATCATCATTGCTCATGTTTTCAAAGTTAATGTCGTtcacctggagaagaggggatgagagatgggGTGATGtagaaaagggagagaaagaaaccAGGAAATCCTACCAACCAAGTCCAATTAAAGACCCCAAAACCATTCCTCTTATTCTCACTTTCTTTGCCacttaaaaatactttaaagcacgacttaagtcattttttggggtatctgtatttcactatttatatttttagaacattttactttttactccatacattttccactgacacccaaaagtacccaAAATATTTTGaattcttagcaggacaggaaaatggtacaattcacacacttatcaagagaacatccctcaaaatccctactgccactgatctggcggactcacttaatttgtaaattatgtctgagttcTGGAGTgtgcctcagaaattacagcccaaataaatgcttcacagagttcaagtaacagacacatctcaacatcaattgttcagaggagactgcgtgaatcaggccttcatgatcaaattgctgcaaagaaaccaccaggtcaccaggtgcacggtgtttcctccgacacattggtgcggctggcttccggattaagTGGCCATCATGTCAAGatgcagtgcagcttggttgggttgtgtttcggaggatgcacagctctcgaccttcgcctctccatacgggagttgcagcaatgagacaagactgtaactaccaattggataccacgaaattggggagaaaaaggggtaaaagtttaaaaaaagacaacaaaaaaagaatAAGACTTGCGTGGGCCAAGAACAAtagagcaatagacattagaccggtggaaatgtttcctttggtctggagtccaaattggagattttttgttccaaccgccgtgtctttgtgagatgcggtgtgggtgaacagacgatctctgcatgtgtatttcccaccataaagcatggaggaggtgttatggtgtgatggagctttgctgttgacactgtctgtaatttatttagaattcaaggcacacttaaccagcatggctaccacagcattctgcagaaatacgccatcccatctggtttgggcttattgggactatcatttgtttttcaacaggacaatgagtgataacgtgctgcatcagatgacctggctccacaatcccccgagctcaagcaaattgagatggtttgggatgagtcggaccgcagagtgaaggaaaagcagccaacaagtgttcggcatatgtaggaactccttcaagactgttggaaaatcattccaggggaagctggttgagagaatgccaagagtgtgcaaagctgtcaacaagacaaagggtggcaatttgaagaatatcaaatataaaatatatttggatttgtttaacacttttttggtaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1475607 lncRNA upstream 107097 41626122 ~ 41626379 (+) True G1293077
TU1475604 lncRNA upstream 107431 41625061 ~ 41626045 (+) True G1293074
TU1475609 lncRNA upstream 122636 41610133 ~ 41610840 (+) True G1293079
TU1475620 lncRNA upstream 140835 41592018 ~ 41592641 (+) True G1293089
TU1475598 lncRNA upstream 144446 41583373 ~ 41589030 (+) False G1293072
TU1475712 lncRNA downstream 4852 41740346 ~ 41749693 (+) True G1293174
TU1475766 lncRNA downstream 70195 41805689 ~ 41809344 (+) False G1293224
TU1475771 lncRNA downstream 70195 41805689 ~ 41810172 (+) False G1293224
TU1475773 lncRNA downstream 70195 41805689 ~ 41810172 (+) True G1293224
TU1475819 lncRNA downstream 126722 41862216 ~ 41866725 (+) True G1293261
XM_036945536.1 mRNA upstream 108436 41588463 ~ 41625040 (+) True LOC110490072
XM_021563215.2 mRNA upstream 145356 41583335 ~ 41588120 (+) True LOC110490073
XM_021563213.2 mRNA upstream 165625 41557648 ~ 41567851 (+) False LOC110490071
XM_021563212.2 mRNA upstream 165625 41557666 ~ 41567851 (+) True LOC110490071
trnap-cgg-207 mRNA upstream 195981 41537424 ~ 41537495 (+) True trnap-cgg-207
XM_021563226.2 mRNA downstream 74749 41810243 ~ 41836130 (+) False iqcg
XM_021563224.2 mRNA downstream 74762 41810256 ~ 41836130 (+) False iqcg
XM_021563223.2 mRNA downstream 74772 41810266 ~ 41836130 (+) True iqcg
XM_021563229.2 mRNA downstream 189680 41925174 ~ 41951832 (+) True LOC110490081
XR_005036313.1 mRNA downstream 283982 42019476 ~ 42023326 (+) True LOC118938919
TU1475600 other upstream 145332 41583373 ~ 41588144 (+) False G1293072
TU1475602 other upstream 145389 41583373 ~ 41588087 (+) True G1293072
TU1473916 other upstream 1602742 40120269 ~ 40130734 (+) True LOC110490048
TU1473879 other upstream 1665569 40067558 ~ 40067907 (+) True G1291464
TU1472866 other upstream 2606467 39126272 ~ 39127009 (+) True G1290614
TU1475855 other downstream 173540 41909034 ~ 41909611 (+) True G1293295
TU1476968 other downstream 1029359 42764853 ~ 42767937 (+) True G1294319
TU1478092 other downstream 1861430 43596924 ~ 43597464 (+) True G1295348
TU1478516 other downstream 2180684 43916178 ~ 43916479 (+) True G1295730
TU1478633 other downstream 2293942 44029436 ~ 44029861 (+) True G1295845

Expression Profile