RNA id: TU1475771


Basic Information

Item Value
RNA id TU1475771
length 1594
lncRNA type antisense_over
GC content 0.44
exon number 4
gene id G1293224
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 41805689 ~ 41810172 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGGAACTGAGTCGTTTAATGTATGTACACAAACATGTAAATTACACACGAGACGGGTACAGCATCTGAAAGACAAAAAGCAGCGAGGTGAGTTCATAGGCACCAAATCAATACAAACATACATTGAGTGGGGAATTGGCACACTTCCAGATGTTTTTCCATATGCGCACTTGCCCAATATGTAGTGGTCATGAGGGGGATGTTTAGTACTAAAATAGAGCCTACAATCCATAGAAAAGGTTTGATTTTTTAGCATCAACTTATAAAGAAAAACAAATCCTTTGTAGCTTCACCCCACAACCCAGATGAACAGCAACAATAAGTGGTGTAACACTGCCAGATAAATATTTAAGGAAACCGACATGCCTGAAGGCAAAGCACTGCCCCAACATCTGACAATGGTGGGTTTATTTTTCTCACAGCTTGCCTCATACACAACCAGTCACTGGAAATGGCTGAAAACCACTTCAAAAGGTGGTAAGTGTTGAAATTAAGCATTTTGCTGTTCAAGTTATCCGTTAAGGGTGTTGCATACAGCACAATTTCTTGGATTTTCCATCCAAAGATCAAACCACCAAACAAGAATGCCTTTTCCCTCTCACAAAATCAGTTTCAAGAGGtgatcacacagaattacatggATGTTCCCTGAACTAACAAAAGTTCAAGTTATTCCAAATTCAGGCAACCTCCTTCCTAAAGTATCTCTGATATTAGACATTGCTGTACAAGCCCTACAAAATCACACTTGAATCAACTAATGAAAAGTCTTTGGAGTTGCTGTGTAAGTTAATCAGGTGCGCTTGTGCAGGGATAAAACAATGTTCTATACGGTTGGGTTGCAGCAAATTCCTTTGAGTTGTATTCGCTTTGGCTCAAACCCTACACAGAGCAAAAAAGCAGTGCTGCCCAAACCACCCATGGGGGACCACCACTAGACAGTGAAGGGCTAGAACAGACTGGACTGTCTGTAGGTCCAGGAAGAAACGTATTGCTAATCAGAGAAGAGCAGCTGAAGGTACTACTCACCACTCTGACTCTGTGTCCCATGGCCTTTGCGGGGAGGTTACTGCTGAACTTGGCCCGCACCATTCCACTGTTGCCATGAGCGCGCATGACTTTGCCCCAGATTACCCGCGTCTTGTTGGGCTTGCCACCAGGCGTCACTGTGTTCTTAGCCTTGTAGACATAAGCACAGCGCTTGCCCAGGTAGAAGTCAACTTCCTCCCTTGTGTAAACTCCCTCCACCTTGAGCAGGGCGGTGTGCTCCCGCTGGTTCCTCAGGCCACGCTTGTACCCGGCAAAGATAGCCTTGCTCCACAGTcttCCTGGCATCTCGAGTCTTCTTCCAGGCACGGAAAAACATCAGAACGGCCTCAACCCTGCAGTCCGGCGCTTGTCAACTTTGTAAAACTATCCAAGTGATATTTTTCTCATCACAGCCTCTCGGACTCAAAATATAGACTGTATGGCAACCTTAACTATATTTCTCTTTGAAACCATGTGTATTTATGCCAAATGTAGACTTAATAACATAGAAATTTAGATTTTATAAAAGTAGCCTTTTGTACTTCTCACCTTCGCTGTCTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1475712 lncRNA upstream 55996 41740346 ~ 41749693 (+) True G1293174
TU1475707 lncRNA upstream 70195 41733476 ~ 41735494 (+) True G1293169
TU1475607 lncRNA upstream 179310 41626122 ~ 41626379 (+) True G1293077
TU1475604 lncRNA upstream 179644 41625061 ~ 41626045 (+) True G1293074
TU1475609 lncRNA upstream 194849 41610133 ~ 41610840 (+) True G1293079
TU1475819 lncRNA downstream 52044 41862216 ~ 41866725 (+) True G1293261
TU1475876 lncRNA downstream 137142 41947314 ~ 41948368 (+) False G1293315
TU1475875 lncRNA downstream 137342 41947514 ~ 41948368 (+) True G1293315
TU1476180 lncRNA downstream 193206 42003378 ~ 42003587 (+) True G1293597
TU1476186 lncRNA downstream 199359 42009531 ~ 42050808 (+) True G1293603
XM_036945536.1 mRNA upstream 180649 41588463 ~ 41625040 (+) True LOC110490072
XM_021563215.2 mRNA upstream 217569 41583335 ~ 41588120 (+) True LOC110490073
XM_021563213.2 mRNA upstream 237838 41557648 ~ 41567851 (+) False LOC110490071
XM_021563212.2 mRNA upstream 237838 41557666 ~ 41567851 (+) True LOC110490071
trnap-cgg-207 mRNA upstream 268194 41537424 ~ 41537495 (+) True trnap-cgg-207
XM_021563226.2 mRNA downstream 71 41810243 ~ 41836130 (+) False iqcg
XM_021563224.2 mRNA downstream 84 41810256 ~ 41836130 (+) False iqcg
XM_021563223.2 mRNA downstream 94 41810266 ~ 41836130 (+) True iqcg
XM_021563229.2 mRNA downstream 115002 41925174 ~ 41951832 (+) True LOC110490081
XR_005036313.1 mRNA downstream 209304 42019476 ~ 42023326 (+) True LOC118938919
TU1475600 other upstream 217545 41583373 ~ 41588144 (+) False G1293072
TU1475602 other upstream 217602 41583373 ~ 41588087 (+) True G1293072
TU1473916 other upstream 1674955 40120269 ~ 40130734 (+) True LOC110490048
TU1473879 other upstream 1737782 40067558 ~ 40067907 (+) True G1291464
TU1472866 other upstream 2678680 39126272 ~ 39127009 (+) True G1290614
TU1475855 other downstream 98862 41909034 ~ 41909611 (+) True G1293295
TU1476968 other downstream 954681 42764853 ~ 42767937 (+) True G1294319
TU1478092 other downstream 1786752 43596924 ~ 43597464 (+) True G1295348
TU1478516 other downstream 2106006 43916178 ~ 43916479 (+) True G1295730
TU1478633 other downstream 2219264 44029436 ~ 44029861 (+) True G1295845

Expression Profile