RNA id: TCONS_00044250


Basic Information

Item Value
RNA id TCONS_00044250
length 3644
lncRNA type antisense_over
GC content 0.38
exon number 11
gene id XLOC_022433
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 29333853 ~ 29358214 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATTACACCGAATGCGCGAGCTGTGCTAACTGTTTCCAACTCGATCAATAATTCAGCACTAAGGCAACAAACGGAGCCGAAACAGAAATTAGTACACCAAAACGACTTAATAAACACACTTGGCAACCAATTAGTTGGCTACACGAGTTGTGGCTATTGTTTACGTGCGACTGTTAGATAACGCGGGGTGCCATTAGCTGAGCTAAGCTAGTTGCTAACCGCGCGCACGCTAGAAATGAATGGGATGTCGCGACGCACCCTTTCCCGCCAGAAAATACGCTAAGCAAATATCACCTCATCGATTGTACCTGATTATCGACCGAATGTGCACAAAACaagtaatttaaagtaattaCACAAAGAAAGCTCGTGGACTATTGCATCCAGTTTCTGCTCCGACCCCCTAAACTGATAAAATGGCCGCCCTGATGCGTCACTGAAGGAATGACGTCATCACTTTGGAGCGTCTCACCACAGCACATGGAGGGGTTTGGAAATGTAacACTTCATTTTGCCTATATGGGGAAATGTGTTGCGGCAGAAGAGAGACTGGATGGGGAGTCCGTCTTCAAGCATGACAGAGGGCGATGTGGAATGTTTTTCTGAGTACATGGAACTTTGGATCCATAGATTGAGAATTGAGGGATTGAGGCTTTGGCTTTCTGGAATATTAAGAATTCAAGTGGGTTTGGTGTCCATGGAGAATCTAAACCATCAGCTTTCGTCATGTGGATTTGCACTGCACAGAGATCTGGACAAAAACTATGTCTTCAGAGTCATGTACAGCGGATGCTTTGTCCAGTTAGAGCACGGAAATTACGTGATTGTGCTGAACCTGTTGAAGAGAGTTAGTCGTTTTGGAGGCAGAACTCAGAAGTTTATGATGAAGTGTCCAGCAGTGTTAGCGCCTCCTAATAGAGAGTACATCCAATGTGATTCAGACTCCATTCAGGTTACCAGAGAGATCCCTGTGGATAATTGGAATAATGagCTCGACTGGTCTCTTGCCTTGAGAGGGAGTCTGGTGGTGGCGTTGGAGGATTCCAGTCTTATTCAAATAAATGTTGAAATGCACAAACCGAACATTACAGTTCAAGGGAGGAGGGACACCATCTTAAGTCCTGTGCAGGTTTTCGCATCTGAAGGTCATTTCTTACCCCTCAAACTGGTCAGTGGCAATTATGCCTACAGCATGGAGGCTACTTGCCCTAACGGGAACACGTCGTCATCTAATGAAACGGTGCTGCATATCTATAAGCGGCGCATGGGTTTGACCAAAAGAGGGGGATATCAAAATGAGACCCTGTCAGTAAGCAGTGTGATGGTGGAGCAGACTGACACGTTTAGCTGGACGGAGACCACTGACTTTGTGCAGCTTATCATTCCTACATCCTACATTCAACAGAATAAGGAGTGTTTAAGTCAAACAGGAGAGAAACTTCAGCAAAATTTCTACAAGATAGACGCTGTCCTCACGTTTAAAGAGACAAATCACAAAATGCACTGGACCATGGAAAACACCTCTCCATGTTCAGAGCTGTTAAAATCACATTCTGTCTATGATGACCCACAAAAAGCCAACTTTACAACACATTCACCAACATGGACTGCAGAAAGGCCTGAAATTCCAGCTGATTACACCACAAACTTGACTCCTTCAGTGTCACCATCGACTACATCTACAGCATTACAGACCGCAGATCCAGACACCGGCACAACCTCAATGCCAACACCACAACTGAAGACAACTGAAGTATTCAACACATCAACTCCTCTTTCATCCCAAGAAGTGTTTTCAAGTACACTTTACAGCCCAAATCACAACTCGACAAGCTCATCTGTACACCAGTGACTGCACAGCGGATGGAAATGCAGGTACCGACTGCacacgtgatttttttttttcatactacACTATTACAATTGGTAGTCCATTAATCAGAGAGCAGATGTAATCACAGTTTGAAATACAGCTACACATTTAAGCGCCATTTTCACTCAGACTGGGATTTACAACACAACAGTCAAGCGGACTCATGCATCTTTTCCGTTGACAAGCAAAGTGCCTTGGAATCACATACGGGGAATGATTACATCTCAGACTGTGTTGGTCATGCTATTTAAATGGACACCTCTCAGCTAGGTGTCTTCCAGGAATAAatgtggtgaatgaggagattctccccaaaaatgtgtaaagcattttgagtgtccagaaaagcgctatataaatgttagcaattattattattaattattattattattattattattataaacgtgGAACTGGACTAAATTGGTATCTAACACAAGAAAGTGGTtgataaattatgtaaaatatgtattaaatgttttagtttaaaatCTGTTCCTGATTtagaaaagtttttctttttaaaaatttaggcaGTTTTATCAGTTGCAGCTAAATGGCTCTCTATTTTTTTCTTGAGCATTtagtattactgtttttttttcagtagtatACTTTAGTACAGATTCTGTATCGTTTGTAGTCATGgaataatatgatttttttttttactgcacaaTTAATCGCTATAGAAATCTCTATCCAAACACCCTCTCTATCATGTTCCTAAATGACAGCTGTTTGTTTATATCTGTTCAGCCACACACTTATAATCTCAGCACTCAAATCTGTGTTTACACTACCGCTGACACAGAGAGTGCAGTTgctatgtataaataaaattgcTTTAGTCTTCTTAACCACACTGTATTGTTATTCACGTCACATAAAAAGTCAGTTATCACAGAATTATTACTAAGATAAAACatagtaaaaatatattaatatataggtCAGATATAATTGAGTTTGTTctagggctgcactatatataatttcagcatcgttATTGCAATATGATCAGTGGACATAGTCACATCATGAGTATACGCACTGTTGAGTCTAGACTATAATTTATTATTTCGCAAGTATTTTTCGAGGCCTGTGACTGAGGATTTTAAAGGATTCAGGCTTAAGGAATTGTACCGTTTTTACTTCattaaaaagttaattttatttaattgtttttaaaactaagactatgtggtattattttacatttgattgttcaactACTATGTACCTGAATACAGTTCAACTCTTAGGAAAAcaataaatcactgtttatttgatttgaattatttttttaaattaattttatctatgcttgtaaattgtttcttatattttatgcatatgtaATCCCCTACATAATTATTTCAATCAATTTTTGCAAATAGTTATGcaagtcatctagtgaaattgtatttatattgcaatatatatatcgcagaattaaaaacaaaaattgcagtgttagatttttccaatatcgcacagccctaatttgTTCACACTTGTTTGTTTGTCCagaatgaaaaactaaataacacAACAGCCTTTGGTGTACTTTTGTGTTCTCAGTGTCATTTTGAAAACTGCATTTAAAgccatttctttttgttttgtatttttatgacaTGTTTGTTTTGGATCCAAATTAAATACTGTGAGGGCTGATTTTAAACACGTTGCTTATCTGTGACATCTGATGGTATGTTTACAAATTGAGAGCTCCTGAAGTGCtcattaaatttaaaaaccatTC

Function

GO:

id name namespace
GO:0048477 oogenesis biological_process
GO:1905516 positive regulation of fertilization biological_process
GO:0035803 egg coat formation biological_process
GO:0043902 positive regulation of multi-organism process biological_process
GO:0035036 sperm-egg recognition biological_process
GO:0080154 regulation of fertilization biological_process
GO:2000241 regulation of reproductive process biological_process
GO:0035601 protein deacylation biological_process
GO:0007339 binding of sperm to zona pellucida biological_process
GO:0007340 acrosome reaction biological_process
GO:0009988 cell-cell recognition biological_process
GO:2000344 positive regulation of acrosome reaction biological_process
GO:0060046 regulation of acrosome reaction biological_process
GO:0032190 acrosin binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045028 lncRNA downstream 76137 29185852 ~ 29257716 (-) True XLOC_022432
TCONS_00045027 lncRNA downstream 880150 28433175 ~ 28453703 (-) True XLOC_022427
TCONS_00044237 lncRNA downstream 1107134 28190529 ~ 28226719 (-) False XLOC_022424
TCONS_00045026 lncRNA downstream 1537930 27788369 ~ 27795923 (-) True XLOC_022417
TCONS_00045025 lncRNA downstream 1561481 27770481 ~ 27772372 (-) True XLOC_022416
TCONS_00044740 lncRNA upstream 316781 29674995 ~ 29706359 (-) True XLOC_022440
TCONS_00044741 lncRNA upstream 462987 29821201 ~ 29822565 (-) False XLOC_022443
TCONS_00044742 lncRNA upstream 463569 29821783 ~ 29822565 (-) True XLOC_022443
TCONS_00044273 lncRNA upstream 482997 29841211 ~ 29844314 (-) True XLOC_022446
TCONS_00044275 lncRNA upstream 542437 29900651 ~ 29901235 (-) True XLOC_022448
TCONS_00044246 mRNA downstream 329100 28954137 ~ 29004753 (-) False XLOC_022431
TCONS_00044247 mRNA downstream 329989 28959560 ~ 29003864 (-) True XLOC_022431
TCONS_00044245 mRNA downstream 525373 28803007 ~ 28808480 (-) True XLOC_022430
TCONS_00044244 mRNA downstream 641272 28685266 ~ 28692581 (-) True XLOC_022429
TCONS_00044242 mRNA downstream 846700 28482780 ~ 28487153 (-) False XLOC_022428
TCONS_00044251 mRNA upstream 17462 29375676 ~ 29376859 (-) False XLOC_022434
TCONS_00044253 mRNA upstream 23227 29381441 ~ 29394505 (-) True XLOC_022435
TCONS_00044254 mRNA upstream 37968 29396182 ~ 29505463 (-) False XLOC_022436
TCONS_00044255 mRNA upstream 37972 29396186 ~ 29502287 (-) False XLOC_022436
TCONS_00044256 mRNA upstream 81593 29439807 ~ 29502287 (-) False XLOC_022436
TCONS_00044249 other downstream 76292 29185852 ~ 29257561 (-) False XLOC_022432
TCONS_00044248 other downstream 76449 29185852 ~ 29257404 (-) False XLOC_022432
TCONS_00044238 other downstream 1110610 28200960 ~ 28223243 (-) True XLOC_022424
TCONS_00044236 other downstream 1110894 28190529 ~ 28222959 (-) False XLOC_022424
TCONS_00044226 other downstream 1511075 27809068 ~ 27822778 (-) True XLOC_022418
TCONS_00044252 other upstream 17464 29375678 ~ 29376841 (-) True XLOC_022434
TCONS_00044280 other upstream 684275 30042489 ~ 30045653 (-) True XLOC_022450
TCONS_00044283 other upstream 1158985 30517199 ~ 30698676 (-) False XLOC_022453
TCONS_00044284 other upstream 1249769 30607983 ~ 30608101 (-) True XLOC_022454
TCONS_00044285 other upstream 1300428 30658642 ~ 30698687 (-) True XLOC_022453

Expression Profile

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