RNA id: TU1476393


Basic Information

Item Value
RNA id TU1476393
length 298
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G1293798
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 42256868 ~ 42257165 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccCTTtacatcaggggtgtcaaactccttccatggagggcctagtgtctgcaggtgtttgttttttgtcctttcaattaagccctagacaaccagatgtggggagttccttactatttgatgaccttaattcatcaatcaagtgcAAAGGAGGAGCAGAAACCCgtagacactcggccctccatagAATGAGTTTAACACCTGTGCATTATACAATGTAAAGTCATGATTGAGTCATTCACCAAGAATAGAGCGTCCTCTTCGGTCTTCTGTTTCCCTATTTATCAGAGTAGTCTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1476358 lncRNA upstream 54965 42201430 ~ 42201903 (+) True G1293769
TU1476224 lncRNA upstream 186919 42069660 ~ 42069949 (+) True G1293637
TU1476186 lncRNA upstream 206060 42009531 ~ 42050808 (+) True G1293603
TU1476213 lncRNA upstream 214042 42041113 ~ 42042826 (+) True G1293626
TU1476212 lncRNA upstream 214312 42041113 ~ 42042556 (+) False G1293626
TU1476576 lncRNA downstream 47132 42304297 ~ 42304553 (+) True G1293974
TU1476585 lncRNA downstream 64426 42321591 ~ 42323337 (+) True G1293979
TU1476613 lncRNA downstream 114640 42371805 ~ 42383605 (+) True trnaa-ugc-118
TU1476671 lncRNA downstream 192310 42449475 ~ 42449737 (+) True G1294052
TU1476923 lncRNA downstream 300225 42557390 ~ 42568776 (+) False G1294276
XM_021563239.2 mRNA upstream 1855 42154291 ~ 42255013 (+) False LOC110490086
XM_021563238.2 mRNA upstream 1855 42154292 ~ 42255013 (+) True LOC110490086
XM_036944383.1 mRNA upstream 202258 42039954 ~ 42054610 (+) False LOC110490085
XM_021563237.2 mRNA upstream 202258 42048599 ~ 42054610 (+) True LOC110490085
XR_005036313.1 mRNA upstream 233542 42019476 ~ 42023326 (+) True LOC118938919
trnaa-ugc-68 mRNA downstream 64881 42322046 ~ 42322117 (+) True trnaa-ugc-68
trnat-ugu-37 mRNA downstream 66379 42323544 ~ 42323615 (+) True trnat-ugu-37
trnaa-ugc-69 mRNA downstream 67301 42324466 ~ 42324537 (+) True trnaa-ugc-69
trnaa-ugc-70 mRNA downstream 68223 42325388 ~ 42325459 (+) True trnaa-ugc-70
trnaa-ugc-71 mRNA downstream 69146 42326311 ~ 42326382 (+) True trnaa-ugc-71
TU1475855 other upstream 347257 41909034 ~ 41909611 (+) True G1293295
TU1475600 other upstream 668724 41583373 ~ 41588144 (+) False G1293072
TU1475602 other upstream 668781 41583373 ~ 41588087 (+) True G1293072
TU1473916 other upstream 2126134 40120269 ~ 40130734 (+) True LOC110490048
TU1473879 other upstream 2188961 40067558 ~ 40067907 (+) True G1291464
TU1476968 other downstream 507688 42764853 ~ 42767937 (+) True G1294319
TU1478092 other downstream 1339759 43596924 ~ 43597464 (+) True G1295348
TU1478516 other downstream 1659013 43916178 ~ 43916479 (+) True G1295730
TU1478633 other downstream 1772271 44029436 ~ 44029861 (+) True G1295845
TU1478844 other downstream 2064338 44321503 ~ 44326179 (+) True cblb

Expression Profile