RNA id: TU1477012


Basic Information

Item Value
RNA id TU1477012
length 314
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G1294362
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 42734291 ~ 42734604 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtaatagttagtatctggtgtggccaccagctgcattaagtactgcagtgtatctcctcctcatggactgcaccagatttgccagttcttgctgtgagatgttatcccactcttccaccaatgcacctgcaagttcccagacattttttgggggaatggccctagccctcaccctccaatccaacaggtcccagatgtgctcaatgggattgagatccgggctcttcgctgctATGagggtcaggatgagcctgcaggaagggtaccacatgagggaggaggatgtcttccctgtaatgcacagcgttaagat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1476975 lncRNA upstream 49877 42683624 ~ 42684414 (+) True G1294325
TU1476986 lncRNA upstream 89061 42645014 ~ 42645230 (+) True G1294336
TU1476923 lncRNA upstream 165515 42557390 ~ 42568776 (+) False G1294276
TU1476924 lncRNA upstream 165515 42568362 ~ 42568776 (+) True G1294276
TU1476671 lncRNA upstream 284554 42449475 ~ 42449737 (+) True G1294052
TU1476971 lncRNA downstream 34891 42769495 ~ 42770500 (+) True G1294322
TU1477134 lncRNA downstream 212931 42947535 ~ 42950110 (+) False G1294476
TU1477135 lncRNA downstream 212931 42947535 ~ 42950110 (+) True G1294476
TU1477224 lncRNA downstream 352863 43087467 ~ 43087808 (+) True G1294564
TU1477237 lncRNA downstream 363604 43098208 ~ 43098439 (+) True G1294576
XM_021563254.2 mRNA upstream 8674 42696715 ~ 42725617 (+) False alg8
XM_036944391.1 mRNA upstream 8674 42696715 ~ 42725617 (+) True alg8
XM_036944389.1 mRNA upstream 110063 42605307 ~ 42624228 (+) False ncbp3
XM_036944390.1 mRNA upstream 110063 42605311 ~ 42624228 (+) True ncbp3
XM_021563249.2 mRNA upstream 188317 42528504 ~ 42545974 (+) False tpst1l
XM_021563256.2 mRNA downstream 3024 42737628 ~ 42759052 (+) True guca1d
trnaa-cgc-2 mRNA downstream 147155 42881759 ~ 42881830 (+) True trnaa-cgc-2
XM_036945538.1 mRNA downstream 399603 43134207 ~ 43156862 (+) True LOC118938889
XM_036944400.1 mRNA downstream 495951 43230555 ~ 43300367 (+) False slc13a2
XM_036944399.1 mRNA downstream 509301 43243905 ~ 43300368 (+) True slc13a2
TU1475855 other upstream 824680 41909034 ~ 41909611 (+) True G1293295
TU1475600 other upstream 1146147 41583373 ~ 41588144 (+) False G1293072
TU1475602 other upstream 1146204 41583373 ~ 41588087 (+) True G1293072
TU1473916 other upstream 2603557 40120269 ~ 40130734 (+) True LOC110490048
TU1473879 other upstream 2666384 40067558 ~ 40067907 (+) True G1291464
TU1476968 other downstream 30249 42764853 ~ 42767937 (+) True G1294319
TU1478092 other downstream 862320 43596924 ~ 43597464 (+) True G1295348
TU1478516 other downstream 1181574 43916178 ~ 43916479 (+) True G1295730
TU1478633 other downstream 1294832 44029436 ~ 44029861 (+) True G1295845
TU1478844 other downstream 1586899 44321503 ~ 44326179 (+) True cblb

Expression Profile