RNA id: TU1476971


Basic Information

Item Value
RNA id TU1476971
length 1006
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1294322
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 42769495 ~ 42770500 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAgttataaatgtccttgtttttgaaagaaaagtacattttttgtggtttaaaatagcatcaaattgatcagaaatacagtgtagacgttgttaatgttgtaaatgactggaATGTAGCTGGAAatgcagatttttaatggaatatctacatagggcatacagaggcacattatcagcaaccatcactcatgtattccaatggcaagttgtggCTCAAaatggctcaaaatggccagaaacaaagaactttcttctgaaactcgtcagtctattcttgttctgagaaattaaggctattccatgcgagaaaataacaagaaactgaagatctcgtacaacgttgtgtactactccctgcCTACTAggcagttgcaaagaaaaagccatatctcagactcgtcaataaaaaggaaagattaagatgggcaaaagaacacagacactggacagaggaactctgcctagaaggccagcatcccggagtcgcatcttcacggttgacgttgagactgatgttttgcgggtactatttaatgaagctgccagttgaggacttgtgaggcgtctgtttctcaaactagactctctaatgtacttgttctcttgctcagttgtgcaccggggcctcccaatcctctttctattctggttagagccagtttgcgctgttctgtgaaaggagtagtacgagatcttcagtttcttggcaatttctcgcatggaatagccttaaattctcagaacaagaatagacttgTTATAGACAGttatttgtttctgtccattttgagcctgtaatcgaacccacaaatgctgatgccccagatactcaactagtctaaagaagtccagttttattgctttttttaaatcagaatgacagttttcagctgtgctaacataattgcaaaagggttttctaatgatcaattagccctttaaaattataaacttggattagctaacacaacgtggcattggaacataggagtgatgcttgctga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1477012 lncRNA upstream 34891 42734291 ~ 42734604 (+) True G1294362
TU1476975 lncRNA upstream 85081 42683624 ~ 42684414 (+) True G1294325
TU1476986 lncRNA upstream 124265 42645014 ~ 42645230 (+) True G1294336
TU1476923 lncRNA upstream 200719 42557390 ~ 42568776 (+) False G1294276
TU1476924 lncRNA upstream 200719 42568362 ~ 42568776 (+) True G1294276
TU1477134 lncRNA downstream 177035 42947535 ~ 42950110 (+) False G1294476
TU1477135 lncRNA downstream 177035 42947535 ~ 42950110 (+) True G1294476
TU1477224 lncRNA downstream 316967 43087467 ~ 43087808 (+) True G1294564
TU1477237 lncRNA downstream 327708 43098208 ~ 43098439 (+) True G1294576
TU1477230 lncRNA downstream 339841 43110341 ~ 43113311 (+) True G1294570
XM_021563256.2 mRNA upstream 10443 42737628 ~ 42759052 (+) True guca1d
XM_021563254.2 mRNA upstream 43878 42696715 ~ 42725617 (+) False alg8
XM_036944391.1 mRNA upstream 43878 42696715 ~ 42725617 (+) True alg8
XM_036944389.1 mRNA upstream 145267 42605307 ~ 42624228 (+) False ncbp3
XM_036944390.1 mRNA upstream 145267 42605311 ~ 42624228 (+) True ncbp3
trnaa-cgc-2 mRNA downstream 111259 42881759 ~ 42881830 (+) True trnaa-cgc-2
XM_036945538.1 mRNA downstream 363707 43134207 ~ 43156862 (+) True LOC118938889
XM_036944400.1 mRNA downstream 460055 43230555 ~ 43300367 (+) False slc13a2
XM_036944399.1 mRNA downstream 473405 43243905 ~ 43300368 (+) True slc13a2
trnas-gcu-9 mRNA downstream 563889 43334389 ~ 43334470 (+) True trnas-gcu-9
TU1476968 other upstream 1558 42764853 ~ 42767937 (+) True G1294319
TU1475855 other upstream 859884 41909034 ~ 41909611 (+) True G1293295
TU1475600 other upstream 1181351 41583373 ~ 41588144 (+) False G1293072
TU1475602 other upstream 1181408 41583373 ~ 41588087 (+) True G1293072
TU1473916 other upstream 2638761 40120269 ~ 40130734 (+) True LOC110490048
TU1478092 other downstream 826424 43596924 ~ 43597464 (+) True G1295348
TU1478516 other downstream 1145678 43916178 ~ 43916479 (+) True G1295730
TU1478633 other downstream 1258936 44029436 ~ 44029861 (+) True G1295845
TU1478844 other downstream 1551003 44321503 ~ 44326179 (+) True cblb
TU1479092 other downstream 1776679 44547179 ~ 44581048 (+) True G1296266

Expression Profile