RNA id: TU1477656


Basic Information

Item Value
RNA id TU1477656
length 542
lncRNA type antisense_over
GC content 0.45
exon number 3
gene id G1294955
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 43169864 ~ 43171387 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATGAATATTTTATTTAATCATGTCAACCTAAATAGACAGTGCAGACTGATGTATCAGGTTGACTATCTTTAGTCAATACAAACAATGTAATAATGACTACTATAGTATGTTTTTCATTGTGCGCTACCATTATGATTAGATCATCTATATTGAACTTATGTAACTTTGTAATAAAAGTCATCATCAGCTTGTATTGTCTATCGCTTTTCATTTCTTTTCTGCCATTGGCTCGCAGTGTCTTgtcgtgtgtagtgtgtgtgggggtgtagtCACTGTAGTCAGAGTCATATGTGAAGCCTCCTCCCatcCAGTCGTGGTCatctaaaaaaaaatcctcaaagTACGCTGAGCGACTCTGTCTGGCCCTGCCTCTCTGACCCCGCCTCCTGTCCTTCCTCCACCTATTGGCTCGTCTCCTGGGGgtgggggatggggagggagtgggTTTAGGGCTGATGTAAAGACGGCCCACCATGGCAGCGTCTATGGGGGACTTGATCCCCACCCAGTCTTTATTGATGAACCGTGGGCCCTTTTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1477653 lncRNA upstream 19490 43150052 ~ 43150374 (+) True G1294953
TU1477230 lncRNA upstream 56553 43110341 ~ 43113311 (+) True G1294570
TU1477237 lncRNA upstream 71425 43098208 ~ 43098439 (+) True G1294576
TU1477224 lncRNA upstream 82056 43087467 ~ 43087808 (+) True G1294564
TU1477134 lncRNA upstream 219754 42947535 ~ 42950110 (+) False G1294476
TU1477695 lncRNA downstream 54432 43225819 ~ 43232807 (+) True G1294992
TU1477735 lncRNA downstream 104222 43275609 ~ 43277639 (+) True G1295023
TU1477737 lncRNA downstream 108548 43279935 ~ 43319383 (+) True G1295025
TU1477896 lncRNA downstream 157239 43328626 ~ 43328947 (+) True G1295176
TU1477898 lncRNA downstream 159692 43331079 ~ 43331377 (+) True G1295178
XM_036945538.1 mRNA upstream 13002 43134207 ~ 43156862 (+) True LOC118938889
trnaa-cgc-2 mRNA upstream 288034 42881759 ~ 42881830 (+) True trnaa-cgc-2
XM_021563256.2 mRNA upstream 410812 42737628 ~ 42759052 (+) True guca1d
XM_021563254.2 mRNA upstream 444247 42696715 ~ 42725617 (+) False alg8
XM_036944391.1 mRNA upstream 444247 42696715 ~ 42725617 (+) True alg8
XM_036944400.1 mRNA downstream 59168 43230555 ~ 43300367 (+) False slc13a2
XM_036944399.1 mRNA downstream 72518 43243905 ~ 43300368 (+) True slc13a2
trnas-gcu-9 mRNA downstream 163002 43334389 ~ 43334470 (+) True trnas-gcu-9
trnas-gcu-10 mRNA downstream 163554 43334941 ~ 43335022 (+) True trnas-gcu-10
trnas-gcu-11 mRNA downstream 170132 43341519 ~ 43341600 (+) True trnas-gcu-11
TU1476968 other upstream 401927 42764853 ~ 42767937 (+) True G1294319
TU1475855 other upstream 1260253 41909034 ~ 41909611 (+) True G1293295
TU1475600 other upstream 1581720 41583373 ~ 41588144 (+) False G1293072
TU1475602 other upstream 1581777 41583373 ~ 41588087 (+) True G1293072
TU1473916 other upstream 3039130 40120269 ~ 40130734 (+) True LOC110490048
TU1478092 other downstream 425537 43596924 ~ 43597464 (+) True G1295348
TU1478516 other downstream 744791 43916178 ~ 43916479 (+) True G1295730
TU1478633 other downstream 858049 44029436 ~ 44029861 (+) True G1295845
TU1478844 other downstream 1150116 44321503 ~ 44326179 (+) True cblb
TU1479092 other downstream 1375792 44547179 ~ 44581048 (+) True G1296266

Expression Profile