RNA id: TU1479092


Basic Information

Item Value
RNA id TU1479092
length 456
RNA type TUCP
GC content 0.51
exon number 3
gene id G1296266
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 44547179 ~ 44581048 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCATACGTTCCACATGTCCTCTACACTGATGAGCAGGTCTGCTCCATGGAAACTGTTGTGTTTCCCTTTGGGGTCATGGTACTTCAGATCCTCCCTCAGGAACCCGTCTGTCTCGCTCATGTCCACGGTTCCATCCGCATCATCATCCATCAGTTTGTGGATGCTACGGATCGCCTCGAAACTCAGCAACGCATTCTCATCCTGGCACAGAATCACATCTATCATACACAGttCTGAGGCTCCATTGCCAACCTGCAGATGGATGGGAGAGGCCTGGTTGGTCCTGTCGGACTCGCTCTGACcccaaaggcacacacacaccacatacaccgTCACCAGCCACACACACCCCATCctcctgagaaagagagagagagataaagacagacccaggacagcagcacaattagacacgaccaaatcatgagaaaacaaaaagataattacttgacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1479053 lncRNA upstream 91088 44444069 ~ 44456091 (+) True G1296228
TU1479052 lncRNA upstream 110317 44435267 ~ 44436862 (+) True G1296227
TU1478861 lncRNA upstream 156102 44390482 ~ 44391077 (+) True G1296050
TU1478864 lncRNA upstream 378344 44168088 ~ 44168835 (+) True G1296051
TU1478835 lncRNA upstream 394159 44152695 ~ 44153020 (+) True G1296030
TU1479147 lncRNA downstream 42573 44623621 ~ 44624085 (+) True G1296303
TU1479148 lncRNA downstream 43521 44624569 ~ 44624869 (+) True G1296304
TU1479151 lncRNA downstream 48805 44629853 ~ 44630112 (+) True G1296307
TU1479010 lncRNA downstream 71199 44652247 ~ 44654702 (+) True G1296186
TU1479013 lncRNA downstream 73867 44654915 ~ 44656628 (+) True G1296189
XM_021563294.2 mRNA upstream 220933 44173501 ~ 44326246 (+) False cblb
XM_021563293.2 mRNA upstream 220933 44173503 ~ 44326246 (+) False cblb
XM_036944415.1 mRNA upstream 227283 44173352 ~ 44319896 (+) False cblb
XM_036944414.1 mRNA upstream 227283 44173494 ~ 44319896 (+) False cblb
XM_036944416.1 mRNA upstream 227283 44173496 ~ 44319896 (+) False cblb
XM_021563303.2 mRNA downstream 5237 44586285 ~ 44600938 (+) False LOC110490121
XM_036944421.1 mRNA downstream 5237 44586285 ~ 44603799 (+) False LOC110490121
XM_036944422.1 mRNA downstream 5255 44586303 ~ 44603799 (+) False LOC110490121
XM_036944423.1 mRNA downstream 5255 44586303 ~ 44603799 (+) False LOC110490121
XM_036944424.1 mRNA downstream 8582 44589630 ~ 44603799 (+) True LOC110490121
TU1478844 other upstream 221000 44321503 ~ 44326179 (+) True cblb
TU1478633 other upstream 517318 44029436 ~ 44029861 (+) True G1295845
TU1478516 other upstream 630700 43916178 ~ 43916479 (+) True G1295730
TU1478092 other upstream 949715 43596924 ~ 43597464 (+) True G1295348
TU1476968 other upstream 1779242 42764853 ~ 42767937 (+) True G1294319
TU1479009 other downstream 68653 44649701 ~ 44652079 (+) True G1296185
TU1481520 other downstream 1673291 46254339 ~ 46260437 (+) False G1298452
TU1481549 other downstream 1733204 46314252 ~ 46316002 (+) True brd1a
TU1483075 other downstream 2988782 47569830 ~ 47570663 (+) True G1299894
TU1483849 other downstream 3365320 47946368 ~ 47947892 (+) True G1300598

Expression Profile