RNA id: TU1479121


Basic Information

Item Value
RNA id TU1479121
length 353
lncRNA type intronic
GC content 0.37
exon number 3
gene id G1296282
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 44567445 ~ 44573979 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttcatattcacccagttcaatgtaacagtgatgggtttaggttactgtcattcatattcacccagttcaatgtaacagtgatgggtttaagttactgtcattcatattccattcacccagttcaatgtaacactgatgggtttaggttactgtcattcatattccatttacccagttcaatgtaaaagtgatgggtttaggttactgtcattaattttcacccagttcaatgtaacagtgatgggtttaggttactgtcattcatagtcacccagttcaatgtcaCAGTGATGGGtataggttactgtcattcatattccattcacccatttcaatgtaacagtgataggttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1479118 lncRNA upstream 71 44567445 ~ 44568591 (+) False G1296282
TU1479053 lncRNA upstream 112571 44444069 ~ 44456091 (+) True G1296228
TU1479052 lncRNA upstream 131800 44435267 ~ 44436862 (+) True G1296227
TU1478861 lncRNA upstream 177585 44390482 ~ 44391077 (+) True G1296050
TU1478864 lncRNA upstream 399827 44168088 ~ 44168835 (+) True G1296051
TU1479120 lncRNA downstream 1772 44572221 ~ 44573979 (+) True G1296282
TU1479147 lncRNA downstream 53172 44623621 ~ 44624085 (+) True G1296303
TU1479148 lncRNA downstream 54120 44624569 ~ 44624869 (+) True G1296304
TU1479151 lncRNA downstream 59404 44629853 ~ 44630112 (+) True G1296307
TU1479010 lncRNA downstream 81798 44652247 ~ 44654702 (+) True G1296186
XM_021563294.2 mRNA upstream 242416 44173501 ~ 44326246 (+) False cblb
XM_021563293.2 mRNA upstream 242416 44173503 ~ 44326246 (+) False cblb
XM_036944415.1 mRNA upstream 248766 44173352 ~ 44319896 (+) False cblb
XM_021563303.2 mRNA downstream 15836 44586285 ~ 44600938 (+) False LOC110490121
XM_036944421.1 mRNA downstream 15836 44586285 ~ 44603799 (+) False LOC110490121
XM_036944422.1 mRNA downstream 15854 44586303 ~ 44603799 (+) False LOC110490121
XM_036944423.1 mRNA downstream 15854 44586303 ~ 44603799 (+) False LOC110490121
XM_036944424.1 mRNA downstream 19181 44589630 ~ 44603799 (+) True LOC110490121
TU1478844 other upstream 242483 44321503 ~ 44326179 (+) True cblb
TU1478633 other upstream 538801 44029436 ~ 44029861 (+) True G1295845
TU1478516 other upstream 652183 43916178 ~ 43916479 (+) True G1295730
TU1478092 other upstream 971198 43596924 ~ 43597464 (+) True G1295348
TU1476968 other upstream 1800725 42764853 ~ 42767937 (+) True G1294319
TU1479009 other downstream 79252 44649701 ~ 44652079 (+) True G1296185
TU1481520 other downstream 1683890 46254339 ~ 46260437 (+) False G1298452
TU1481549 other downstream 1743803 46314252 ~ 46316002 (+) True brd1a
TU1483075 other downstream 2999381 47569830 ~ 47570663 (+) True G1299894
TU1483849 other downstream 3375919 47946368 ~ 47947892 (+) True G1300598

Expression Profile