RNA id: TU1479013


Basic Information

Item Value
RNA id TU1479013
length 1714
lncRNA type antisense_over
GC content 0.51
exon number 1
gene id G1296189
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 44654915 ~ 44656628 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAATTATCAGGTCATTCAATTATTTTCGAATTAGCCAAAAACTCAAATACCTGATTGACATTTTGAGATAGTACGCGTGTTCTTCCAACCATACACTTGGAGTGCATCCGTTTCCTCTTAATTCAAGGCCCTTCCATGACCAGAGGATATATGTGGAGAAAGACGGCCTTGGCGTTGGATTCAGACAAAGAGGAGAAACACTGAAGATCCCAATTCATCCGCTGTGTCTGGCTGCATCCTCTTCATAATAAGATAGTCCTATAGTCCCATAGTCCACAAGCACTggctactgtttctgtttgttaaaCCATACTACTTTCAATAAATGAAAGAATATACCTTTTCTTTTCATTTTGTGTGTTCAGAAAGCAGTACACGTAATCAGCAGTGGCACATTTGGCAAATCAACTCTCCTTTATCATGAGTCACGGCACAACTCTGGAGAGGAAGAAGTACTACTGAGGGCTTGGAAACTTCCTCACTACCTTCATCCACACAGTAGTCTCTTCCTCTCAGGGGATGGAGGGTGACTTGGCAATGTTCCATTCTTCTCACAACCACGTCCcaaatggccctggtcaaaagtagtgagtacactatgtagggaatagggcaccatttgggatgGCTGACACATTTAAAGGTGCCTCGGGGTGTCCGGGAAAGGTGTCGTTTCTTCAGTGTTTAGGGGGGGAAGGCAGTGTAGACGCAGCGATTGTATTTCTCCAAGTGACTAGCTACAGCTGGTGTGATGAGAGAAAGGTGgaaaagtatacagtataaaTATACAGCTATTATGGATATAGCGCTTCACTGCAGAGTCATACGCACTAGTAAACAATGACCACCACATTCAGAGTACAGTGAGAAACACTGATGCATAACAACAATGCAAAATCAAAACAGACCGCCAAACCCCAGGCATTGGCAAGATAGATAACTCAAGAAGAAAACACAGTGTAGCACAGATCATCGTCATTCCAAACCTTGTACAGTAGTCAGTCAGCGATAGATACAACAAGTGCTTCAAGATATTAGATACCACAGTGCATTCTTTCCCACGGATAGCTAGCAGTTTGCCAGCCCCTCAGACCAGAGACAAGgacaatggagggagggatggatctGACAGTATGGCCCCCGGCccagcctccctccatccctctctccctccctctgcttacTTCTCCTTGACAATCTCCTCATATTTGGGCGGAGGGTCGCTGTACGGCGCCGACACCTCGTCGCTGCTGCTCTCCAGGTGTCCTGTCACCTCCTCgtaggaaggaggaggtgtggcACCGGAGAGACGCGACGCTACTGACACAGACGGATCCTGGACGTACAGGGCTGAGCGAGTGTTCTGAGGGTGGGAGTGAGGTTCTTGGGGAACGTTTGCGGCGCAAACCAGCGaccctcctccacttcctcctacTACTCTCTCCACCCCACTCACCACCACCGTGGGCCTGGATAAGGGGGTCTCGGAGTGGGATGGCGTGTCCCGGTGGACCAGGATGCGCGGCAGGCTGCGGGTGTTGCGGTTGTTCATGTAGCGGTTCTGGGTGTAGGCTGGCCGCCGCCGTGTGGCCTTCTGCAGCTGGCACCTCCAGATGAGGAAGAGggcgatgaggaggaggagagccacGCCCAGCAGGGGAACCACCATGTAGAGGTGGCCCTCTGAACGGCCGTCCCTGGTCTGCTCGTGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1479010 lncRNA upstream 213 44652247 ~ 44654702 (+) True G1296186
TU1479151 lncRNA upstream 24803 44629853 ~ 44630112 (+) True G1296307
TU1479148 lncRNA upstream 30046 44624569 ~ 44624869 (+) True G1296304
TU1479147 lncRNA upstream 30830 44623621 ~ 44624085 (+) True G1296303
TU1479119 lncRNA upstream 80936 44569992 ~ 44573979 (+) False G1296282
TU1479167 lncRNA downstream 3849 44660477 ~ 44660710 (+) True G1296322
TU1479169 lncRNA downstream 6204 44662832 ~ 44663251 (+) True G1296324
TU1479176 lncRNA downstream 14057 44670685 ~ 44671027 (+) True G1296331
TU1479180 lncRNA downstream 19122 44675750 ~ 44676043 (+) True G1296334
TU1479264 lncRNA downstream 204427 44861055 ~ 44861335 (+) True G1296410
XM_021564189.2 mRNA upstream 6085 44646793 ~ 44648830 (+) True LOC110490732
XM_036944421.1 mRNA upstream 51116 44586285 ~ 44603799 (+) False LOC110490121
XM_021563311.2 mRNA downstream 62672 44719300 ~ 44721744 (+) True cldn2
XM_036944432.1 mRNA downstream 79132 44735760 ~ 44848514 (+) False LOC110490127
XM_036944427.1 mRNA downstream 80905 44737533 ~ 44848514 (+) False LOC110490127
XM_036944428.1 mRNA downstream 80905 44737533 ~ 44848514 (+) False LOC110490127
XM_036944429.1 mRNA downstream 80907 44737535 ~ 44848514 (+) False LOC110490127
TU1479009 other upstream 2836 44649701 ~ 44652079 (+) True G1296185
TU1479092 other upstream 73867 44547179 ~ 44581048 (+) True G1296266
TU1478844 other upstream 328736 44321503 ~ 44326179 (+) True cblb
TU1478633 other upstream 625054 44029436 ~ 44029861 (+) True G1295845
TU1478516 other upstream 738436 43916178 ~ 43916479 (+) True G1295730
TU1481520 other downstream 1597711 46254339 ~ 46260437 (+) False G1298452
TU1481549 other downstream 1657624 46314252 ~ 46316002 (+) True brd1a
TU1483075 other downstream 2913202 47569830 ~ 47570663 (+) True G1299894
TU1483849 other downstream 3289740 47946368 ~ 47947892 (+) True G1300598
TU1484302 other downstream 3703200 48359828 ~ 48360439 (+) True kiss2

Expression Profile