RNA id: TU1479285


Basic Information

Item Value
RNA id TU1479285
length 2481
lncRNA type antisense_over
GC content 0.41
exon number 3
gene id G1296430
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 44937205 ~ 45000672 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGAAGAAGTAGCCACAAGCCAATCTTTATTGATTACGGTACATATTCAGCAACACGACATACCGGTACgaccattaaatacattttagtaaTAGACCTGCAACCCCTGGCAAAGGCAATTGGAATATCAGGCACTAGAGTTGTTTGTTGGTGGTTGAGTGTGCTGCACCACTATTCCTGCCCGCTTGTCAAAATAGACTTTCACAAACAGGCTGTCCCCAAAAATACTTACGTAAAACCGTGAGTTACACGCACTCAAACTCTGAGTATAATCCTTtccaatccttgtcatatgaagacaaATGTAGAATACATAAAACAGTAGGGAACAAATGATCACCGTACACAAACGAGTGAAGTGGTGAaaaaaaagatcaaggacaacaaccacccgagccactgcctgttcatcccgctatcatccagaaggcgaggtcagtataggtgtatcaaagctgggaccgagagacagcttctatctcaaggccatcagactgttaaacagctgctGCCagcatactgactcatctctagccactttaataataaaaaaaatggatgtaaatgtatcactagtcactttaaaaaaaatgccaCTTTATAggttttcataccctacattactcatctcatatgtatatactgtatcttggccatcactcatccatatatttatatgtacatattcttcttcattcctttacacttgtgtgtgaaattttagatgacttgttagatattactgcatggtcggaactagaagccatgtgtatgtgaccaataaaatttgatttgaaaacagaAGGGCAGATGGTTGATTGCACGGAATGTGACACCTGACCACAATAAAGGTCAACTGTCAAAGGACATTAGAACATACAACAAATAACTAGTAGGGGAGAGAACATGGGTgactctgaaatggcaccctattttcccTTGCATGCCATTTCAGATGGAGGCCATTTGTGAGTGCAGCACACACAACTCTGTACATACCAGGTTATTAACAGGTAGAGAGAATTTAGTCACAATGAACACAAAATGATGCATTCAAAGATCCCAGATACAAGGCTGATGTCACTATACTTCCTCAAACTGTCCTTCCTCAGAATTGTCCCAAACAGTCTCAGCAACCCAGAACCAAATCTCAACATCAAACAAAAACCTTCAACAAAGTAACTTGGTCTCTCCCCACATCTTAGTCATTTGGTAAAATACCACCATGCACATACGGTTAGTTCCAAATGAGATCCTGGACAGATAAAGACTACAGAACATATTATTTAAAAAGGCCATAAATATAGTAAAAGTAAAACAGACTTTACATTCAGTAAATCAACAGTCAGAACCATGTAGTTGATCCGCTTGGCTTGTGATGCATTGTAACGTTGAGGCTTGAAGAATTACGTTTTTCTTCTGCAGTCTGTCTTTGAGAcaatgggagaatctcaattgcatactacTTGCATCCTCTCTCGCCTCCTTCAAGAAACCCAAagttctctgaccttctcctccaatgggttttgagaaagaGGCGAGGACATGAGAAGTATGCAGTGGAGATTCTCCCATAGAAGAGCCCATTCTCACCCTTTTCACATTATCGTGCCAACCCAAACCGTACCGGCTCAGATTTTGGTTTCACATTTTCCTTTCTAGCGTGGTTTCAGCCAGTACAGTACAGCTTGGATTGattcagtagtgtgaaaaggacCTCTCTCTCAGGGAGTAGTATGTTTCTGTCAGTGTTATAAATGTTCTATGAGTTGGTTTAGAAACCCAGAGGGTGAGGAGCGACGATGCCTCCATTCTCCACTACGGCAGCAGATATGGCCTTCATGTTCTTAAAGACCTGGGTGGTGGAACTAGACTTCAGGTCCTTGACGTTCTTCATGATCCTGTCATAGgcctggtggtggagggaggagaggggggcagagatgagacttgtgtatgtacagtgtgcacacacacaatataGTGTCAAGAAAAAATGTGTGAACCCTTTGGGAATACCTGATTTCCGCATACATTTGTCATAgtggcggcaagtagcctagtggttagagcgtaggactAGCAAACGAAAGGTTGTTATTTAGCAAAAAGTTAACAAATGTtatttttggacagcagtggcttcttctgtggtgtcctcccatgaacactatTCTTGTTtcgtgttttacgtatcgtagactcgtcaagagatgttagcatgttccagagatttctgtaagtctttagctgacactaggattcttcttaacctcattgagcattctgcgttgtgctcttgcagtcatctttgcaggacggcaactcctagggagagtagcaacagtgctgaactttctccatttatagacaatttgtctttctgtggactgatgaacatcaaggcttttagagatactttgtaaccctttccagtcAACAATttttaatcttaggtcttctgaaatctcttttgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1479337 lncRNA upstream 11262 44986018 ~ 44986472 (+) True G1296481
TU1479318 lncRNA upstream 18443 44945562 ~ 44979291 (+) True G1296462
TU1479308 lncRNA upstream 66124 44931051 ~ 44931610 (+) True G1296452
TU1479302 lncRNA upstream 72648 44924872 ~ 44925086 (+) True G1296446
TU1479267 lncRNA upstream 131656 44863552 ~ 44866078 (+) True G1296412
TU1479381 lncRNA downstream 89494 45090166 ~ 45096521 (+) True LOC110490132
TU1479384 lncRNA downstream 91764 45092436 ~ 45144752 (+) True G1296527
TU1479470 lncRNA downstream 189422 45190094 ~ 45191164 (+) True G1296611
TU1479482 lncRNA downstream 208137 45208809 ~ 45209014 (+) True G1296623
TU1479557 lncRNA downstream 322848 45323520 ~ 45323774 (+) True G1296689
XM_036944433.1 mRNA upstream 3839 44937985 ~ 44993895 (+) False LOC110490129
XM_036944434.1 mRNA upstream 3839 44938304 ~ 44993895 (+) False LOC110490129
XM_036944435.1 mRNA upstream 3839 44944561 ~ 44993895 (+) True LOC110490129
XM_036944427.1 mRNA upstream 149220 44737533 ~ 44848514 (+) False LOC110490127
XM_021563325.2 mRNA downstream 89473 45090145 ~ 45151979 (+) False LOC110490132
XM_036944437.1 mRNA downstream 89473 45090145 ~ 45151980 (+) False LOC110490132
XM_021563326.2 mRNA downstream 111802 45112474 ~ 45151604 (+) False LOC110490132
XM_021563327.2 mRNA downstream 157397 45158069 ~ 45174534 (+) True LOC110490134
XM_021563330.2 mRNA downstream 192221 45192893 ~ 45196185 (+) False LOC110490135
TU1479009 other upstream 345655 44649701 ~ 44652079 (+) True G1296185
TU1479092 other upstream 416686 44547179 ~ 44581048 (+) True G1296266
TU1478844 other upstream 671555 44321503 ~ 44326179 (+) True cblb
TU1478633 other upstream 967873 44029436 ~ 44029861 (+) True G1295845
TU1478516 other upstream 1081255 43916178 ~ 43916479 (+) True G1295730
TU1481520 other downstream 1253667 46254339 ~ 46260437 (+) False G1298452
TU1481549 other downstream 1313580 46314252 ~ 46316002 (+) True brd1a
TU1483075 other downstream 2569158 47569830 ~ 47570663 (+) True G1299894
TU1483849 other downstream 2945696 47946368 ~ 47947892 (+) True G1300598
TU1484302 other downstream 3359156 48359828 ~ 48360439 (+) True kiss2

Expression Profile