RNA id: TU1479482


Basic Information

Item Value
RNA id TU1479482
length 206
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1296623
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 45208809 ~ 45209014 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atatatatggtaatgggctatagtgcataacacagaaacCTCATAATCCCCCTTTTTACACCCCTATGGGGTGTAACCATACCATCCGAAATACTAGGTTGCTGATGAACCCAGGAACTTTAAACCTTTATTTTGTGAATATATGAAGTGATGCATGTCCCTTTGTTGAttaacatatatacagtgccttgcaaaagtattcggcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1479470 lncRNA upstream 17645 45190094 ~ 45191164 (+) True G1296611
TU1479384 lncRNA upstream 64057 45092436 ~ 45144752 (+) True G1296527
TU1479381 lncRNA upstream 112288 45090166 ~ 45096521 (+) True LOC110490132
TU1479285 lncRNA upstream 208137 44997734 ~ 45000672 (+) True G1296430
TU1479337 lncRNA upstream 222337 44986018 ~ 44986472 (+) True G1296481
TU1479557 lncRNA downstream 114506 45323520 ~ 45323774 (+) True G1296689
TU1480345 lncRNA downstream 125017 45334031 ~ 45334294 (+) True G1297355
TU1480407 lncRNA downstream 210406 45419420 ~ 45419642 (+) True G1297413
TU1480410 lncRNA downstream 221191 45430205 ~ 45430471 (+) True G1297416
TU1480458 lncRNA downstream 288402 45497416 ~ 45500415 (+) True G1297458
XM_021563330.2 mRNA upstream 12624 45192893 ~ 45196185 (+) False LOC110490135
XM_021563332.2 mRNA upstream 12624 45192893 ~ 45196185 (+) False LOC110490135
XM_021563328.2 mRNA upstream 12624 45192895 ~ 45196185 (+) False LOC110490135
XM_021563329.2 mRNA upstream 12624 45192896 ~ 45196185 (+) False LOC110490135
XM_036944438.1 mRNA upstream 12624 45192898 ~ 45196185 (+) True LOC110490135
XR_005036353.1 mRNA downstream 77727 45286741 ~ 45286928 (+) True LOC118938959
XR_005036355.1 mRNA downstream 78155 45287169 ~ 45287285 (+) True LOC118938961
XR_005036315.1 mRNA downstream 87522 45296536 ~ 45299495 (+) True LOC110490136
XM_021563336.2 mRNA downstream 129536 45338550 ~ 45376332 (+) False LOC110490137
XM_036944440.1 mRNA downstream 129536 45338550 ~ 45376332 (+) True LOC110490137
TU1479009 other upstream 556730 44649701 ~ 44652079 (+) True G1296185
TU1479092 other upstream 627761 44547179 ~ 44581048 (+) True G1296266
TU1478844 other upstream 882630 44321503 ~ 44326179 (+) True cblb
TU1478633 other upstream 1178948 44029436 ~ 44029861 (+) True G1295845
TU1478516 other upstream 1292330 43916178 ~ 43916479 (+) True G1295730
TU1481520 other downstream 1045325 46254339 ~ 46260437 (+) False G1298452
TU1481549 other downstream 1105238 46314252 ~ 46316002 (+) True brd1a
TU1483075 other downstream 2360816 47569830 ~ 47570663 (+) True G1299894
TU1483849 other downstream 2737354 47946368 ~ 47947892 (+) True G1300598
TU1484302 other downstream 3150814 48359828 ~ 48360439 (+) True kiss2

Expression Profile