RNA id: TCONS_00044740


Basic Information

Item Value
RNA id TCONS_00044740
length 1724
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id XLOC_022440
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 29674995 ~ 29706359 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTTGAAAtctcttagttttatttgaagttatcgTAAATTTGAGCATATTTTAAGAGTttaatatgaagagttcagatgcaaaaacctctaaatgccatctaaaatgtCCTCCTAAAaggagcatttttctcaggctcctatgtttatgttcagatatttaattttaaaggcaatgaaaagaataCCACTATAAAAGTAAGTCCacacacaggagttggagaaaaatgctaattttggaTGAAAATATTAATTGGCgtttagagatttttgcatctaaaatcttcatatacagttgattgaTCTCAGAACTAATTTGAGAACAGTTATTGTTTACTGagcatgggtgcttctgcaaggtgAGAATCTTAAAACTCAAAAGCCTTACAAgaaaatcttctaaatcttcaTACTAAAATGAAGATTTAACTCTAACAAGTCTtactaataattttaaacacCTAGGATTACTTTTATTGCCAACATTTCCTTCTTTTAATTCAATCCCCTCTTAACTTCAAATCACTTAAACAAGcagttggaccaacacaattccttcatgttgttccaacacaaaacACTTAAACTAACTTAAtgctttacaaatttaagtagactgaacataaaacaaataaattgaccAAATAAATTACATGgattgtgttgtttctgctcattttaaacaggtagtttgaacaagcagcagtaatcatTTTTGAGTGCTTCTGAATAACAAGGAACTGCATGACTTCTGCAATGTCAGGACCTCACACAAGAGCCGGAGAGCTGAAAGCCTATTATCTGCCAACACTTTCGACAGGGAACTGTTATCTGTTTTCATGTCTCAGAGCTAGTTTTAaagacacacgcgcacacacaacagAGTCTCTCTACTTTTGTGGTTTTAAAATCAGGGCAGATTCAAGAacaaacatacactcacacacaaaaaacaaagaacGTCTACAAAGAGTTTGAGAGGAAAACAGTGCCTCTATTATAAACCAAAGAGAATCATCAATCAGAAAGAGAGAAAAGATTGAAAATGCACAATACGGCATTGACAGAAATCATCATGCACTCAGAGACAAAGTTTCCTCCTCTGTTTAAAGATGCAGAATAACTGTTTCCAATTGAGAAGGAAGTTTCATAATAACTGCTTCTAATGAAAGTGACAGGTATATTTAATTTAGAGATTTTTCCAAATGTTCATATTGTTCAAATTCTTTTGGGGTTCGGTGAAATAATTATACAGTGAAATATTCTTAAGatttgaaattaatatttgtctatattattatttaaagctgtcacggtggcgcagcgggtagcaggattgcctcacagcaagaaggtcgcgggttcgagcctcagctggctccgttttcccccacagtccaaagacgtggtataggtgaattgggtaagctaaattgtctgtagtgtatgtatgtaaatgagtgtgtatgggtgtttcccagtcctgggttgcagctggaggggcatccgctgcgtaaaacatatgctggataagttggtggttcattccgctgtggcgtcccaatattaataaagggactaagttgaaaagaaaatgaattaatcaattaatatgCAGAGCTactttttcagcatcattactttgtcgaatgatccttcagaaatcattctaataagTTGAattgctcaagaaacatttattattattataaaggttGAAAACCCc

Function

GO:

id name namespace
GO:0044260 cellular macromolecule metabolic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044250 lncRNA downstream 316781 29333853 ~ 29358214 (-) False XLOC_022433
TCONS_00044739 lncRNA downstream 317236 29355617 ~ 29357759 (-) True XLOC_022433
TCONS_00045028 lncRNA downstream 417279 29185852 ~ 29257716 (-) True XLOC_022432
TCONS_00045027 lncRNA downstream 1221292 28433175 ~ 28453703 (-) True XLOC_022427
TCONS_00044237 lncRNA downstream 1448276 28190529 ~ 28226719 (-) False XLOC_022424
TCONS_00044741 lncRNA upstream 114842 29821201 ~ 29822565 (-) False XLOC_022443
TCONS_00044742 lncRNA upstream 115424 29821783 ~ 29822565 (-) True XLOC_022443
TCONS_00044273 lncRNA upstream 134852 29841211 ~ 29844314 (-) True XLOC_022446
TCONS_00044275 lncRNA upstream 194292 29900651 ~ 29901235 (-) True XLOC_022448
TCONS_00045029 lncRNA upstream 302904 30009263 ~ 30010819 (-) True XLOC_022449
TCONS_00044268 mRNA downstream 6709 29583822 ~ 29668286 (-) True XLOC_022439
TCONS_00044265 mRNA downstream 7273 29580584 ~ 29667722 (-) False XLOC_022439
TCONS_00044266 mRNA downstream 7279 29583235 ~ 29667716 (-) False XLOC_022439
TCONS_00044267 mRNA downstream 7451 29583822 ~ 29667544 (-) False XLOC_022439
TCONS_00044263 mRNA downstream 105153 29561918 ~ 29569842 (-) False XLOC_022438
TCONS_00044269 mRNA upstream 5210 29711569 ~ 29751730 (-) True XLOC_022441
TCONS_00044270 mRNA upstream 50244 29756603 ~ 29812667 (-) True XLOC_022442
TCONS_00044271 mRNA upstream 116927 29823286 ~ 29824146 (-) True XLOC_022444
TCONS_00044272 mRNA upstream 120775 29827134 ~ 29858087 (-) True XLOC_022445
TCONS_00044274 mRNA upstream 154884 29861243 ~ 29878643 (-) True XLOC_022447
TCONS_00044252 other downstream 298154 29375678 ~ 29376841 (-) True XLOC_022434
TCONS_00044249 other downstream 417434 29185852 ~ 29257561 (-) False XLOC_022432
TCONS_00044248 other downstream 417591 29185852 ~ 29257404 (-) False XLOC_022432
TCONS_00044238 other downstream 1451752 28200960 ~ 28223243 (-) True XLOC_022424
TCONS_00044236 other downstream 1452036 28190529 ~ 28222959 (-) False XLOC_022424
TCONS_00044280 other upstream 336130 30042489 ~ 30045653 (-) True XLOC_022450
TCONS_00044283 other upstream 810840 30517199 ~ 30698676 (-) False XLOC_022453
TCONS_00044284 other upstream 901624 30607983 ~ 30608101 (-) True XLOC_022454
TCONS_00044285 other upstream 952283 30658642 ~ 30698687 (-) True XLOC_022453
TCONS_00044303 other upstream 1633094 31339453 ~ 31345494 (-) True XLOC_022462

Expression Profile

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