RNA id: TCONS_00044742


Basic Information

Item Value
RNA id TCONS_00044742
length 429
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id XLOC_022443
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 29821201 ~ 29822565 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAGATAtcccagccggcacacgaccgaccttcaacgttgaaatatggttgaaataaggtcagatgtgttttgaacgttgaaataatgttgatagaacgtttaatgttgaacggttgaaaaacagcctgcatatgacaaggcttcaacgttgaaatgtggttgaaaatacgtcagttgttgctttaatgttgaaacaatgttgaatgataaatggttgaaaaaagttacagaaatccttgtacaaatcaacgttgacattttttttatcatggtctgtatgttgaattaacgtcatggcttcacccaatattcaacatgtttggttaccatggtatcggaggactcggcgcacgcggccacgcgcagcgcttcacttcacttaattacgaacacctgacctgcagtgcagcagaattcagagacatgtaa

Function

GO:

id name namespace
GO:0099643 signal release from synapse biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0031234 extrinsic component of cytoplasmic side of plasma membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0045202 synapse cellular_component
GO:1905360 GTPase complex cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0044306 neuron projection terminus cellular_component
GO:0043195 terminal bouton cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0098797 plasma membrane protein complex cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044740 lncRNA downstream 115424 29674995 ~ 29706359 (-) True XLOC_022440
TCONS_00044250 lncRNA downstream 463569 29333853 ~ 29358214 (-) False XLOC_022433
TCONS_00044739 lncRNA downstream 464024 29355617 ~ 29357759 (-) True XLOC_022433
TCONS_00045028 lncRNA downstream 564067 29185852 ~ 29257716 (-) True XLOC_022432
TCONS_00045027 lncRNA downstream 1368080 28433175 ~ 28453703 (-) True XLOC_022427
TCONS_00044273 lncRNA upstream 18646 29841211 ~ 29844314 (-) True XLOC_022446
TCONS_00044275 lncRNA upstream 78086 29900651 ~ 29901235 (-) True XLOC_022448
TCONS_00045029 lncRNA upstream 186698 30009263 ~ 30010819 (-) True XLOC_022449
TCONS_00045030 lncRNA upstream 231869 30054434 ~ 30059126 (-) False XLOC_022451
TCONS_00045031 lncRNA upstream 231869 30054434 ~ 30059176 (-) True XLOC_022451
TCONS_00044270 mRNA downstream 9116 29756603 ~ 29812667 (-) True XLOC_022442
TCONS_00044269 mRNA downstream 70053 29711569 ~ 29751730 (-) True XLOC_022441
TCONS_00044268 mRNA downstream 153497 29583822 ~ 29668286 (-) True XLOC_022439
TCONS_00044266 mRNA downstream 154067 29583235 ~ 29667716 (-) False XLOC_022439
TCONS_00044271 mRNA upstream 721 29823286 ~ 29824146 (-) True XLOC_022444
TCONS_00044272 mRNA upstream 4569 29827134 ~ 29858087 (-) True XLOC_022445
TCONS_00044274 mRNA upstream 38678 29861243 ~ 29878643 (-) True XLOC_022447
TCONS_00044276 mRNA upstream 190675 30013240 ~ 30045733 (-) False XLOC_022450
TCONS_00044277 mRNA upstream 191519 30014084 ~ 30045661 (-) False XLOC_022450
TCONS_00044252 other downstream 444942 29375678 ~ 29376841 (-) True XLOC_022434
TCONS_00044249 other downstream 564222 29185852 ~ 29257561 (-) False XLOC_022432
TCONS_00044248 other downstream 564379 29185852 ~ 29257404 (-) False XLOC_022432
TCONS_00044238 other downstream 1598540 28200960 ~ 28223243 (-) True XLOC_022424
TCONS_00044236 other downstream 1598824 28190529 ~ 28222959 (-) False XLOC_022424
TCONS_00044280 other upstream 219924 30042489 ~ 30045653 (-) True XLOC_022450
TCONS_00044283 other upstream 694634 30517199 ~ 30698676 (-) False XLOC_022453
TCONS_00044284 other upstream 785418 30607983 ~ 30608101 (-) True XLOC_022454
TCONS_00044285 other upstream 836077 30658642 ~ 30698687 (-) True XLOC_022453
TCONS_00044303 other upstream 1516888 31339453 ~ 31345494 (-) True XLOC_022462

Expression Profile

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