RNA id: TU1481486


Basic Information

Item Value
RNA id TU1481486
length 210
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G1298423
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 46223832 ~ 46224041 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctacaaatacttaGCCCGGCCTCTTCCATgatgccagatcgtaatctctgctcagtcagtctacgcTTCTAGCTGTTTGCTACTATCGTGTTGTGCCCGTTTTCCTTGCCTGACGCTGTTTTCCCctccgctacagttctgcccgctttgactctggtccctgtctccaggcCTCATCATCCTGCTACTGTCTTGGATTCCCCTCTGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1481485 lncRNA upstream 1892 46221714 ~ 46221940 (+) True G1298422
TU1481459 lncRNA upstream 24119 46199355 ~ 46199713 (+) True G1298396
TU1481402 lncRNA upstream 70720 46152828 ~ 46153112 (+) True G1298347
TU1481372 lncRNA upstream 93357 46130246 ~ 46130475 (+) True G1298318
TU1481350 lncRNA upstream 107875 46115589 ~ 46115957 (+) True G1298296
TU1481487 lncRNA downstream 597 46224638 ~ 46224852 (+) True G1298424
TU1481523 lncRNA downstream 30298 46254339 ~ 46260437 (+) False G1298452
TU1481524 lncRNA downstream 30298 46254339 ~ 46255381 (+) True G1298452
TU1481571 lncRNA downstream 120876 46344917 ~ 46345288 (+) True G1298495
TU1481572 lncRNA downstream 121827 46345868 ~ 46346080 (+) True G1298496
XM_021563365.2 mRNA upstream 51015 46168371 ~ 46172817 (+) True LOC110490155
XM_036944446.1 mRNA upstream 285027 45902083 ~ 45938805 (+) True il17rel
XM_021563358.2 mRNA upstream 392743 45790639 ~ 45831089 (+) False LOC110490152
XM_021563367.2 mRNA downstream 36552 46260593 ~ 46268733 (+) False alg12
XM_036944447.1 mRNA downstream 36552 46260593 ~ 46268733 (+) True alg12
XM_021563371.2 mRNA downstream 69541 46293582 ~ 46316075 (+) False brd1a
XM_021563370.2 mRNA downstream 69543 46293584 ~ 46316075 (+) False brd1a
XM_036944453.1 mRNA downstream 1188396 47412437 ~ 47443051 (+) False cerk
TU1479009 other upstream 1571753 44649701 ~ 44652079 (+) True G1296185
TU1479092 other upstream 1642784 44547179 ~ 44581048 (+) True G1296266
TU1478844 other upstream 1897653 44321503 ~ 44326179 (+) True cblb
TU1478633 other upstream 2193971 44029436 ~ 44029861 (+) True G1295845
TU1478516 other upstream 2307353 43916178 ~ 43916479 (+) True G1295730
TU1481520 other downstream 30298 46254339 ~ 46260437 (+) False G1298452
TU1481549 other downstream 90211 46314252 ~ 46316002 (+) True brd1a
TU1483075 other downstream 1345789 47569830 ~ 47570663 (+) True G1299894
TU1483849 other downstream 1722327 47946368 ~ 47947892 (+) True G1300598
TU1484302 other downstream 2135787 48359828 ~ 48360439 (+) True kiss2

Expression Profile