RNA id: TU1483594


Basic Information

Item Value
RNA id TU1483594
length 207
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G1300363
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 47786985 ~ 47787191 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAATTATCCAGTGTCACACCAATTTGGAGAAATGGCAATTCCACACCTGGTAAAAAATGACTTGGGGTTTAAAGAATGGGCAAGAAAAGGGATTGTTAAAGTGAtgaacttacagtgccttgcaaaagtattcaccccccttggcattttttcctattttgttgcaatacaacctgtaatttaaatagatttttatttggatgataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1483577 lncRNA upstream 24502 47762269 ~ 47762483 (+) True G1300348
TU1483575 lncRNA upstream 28591 47758084 ~ 47758394 (+) True G1300346
TU1483563 lncRNA upstream 49377 47737381 ~ 47737608 (+) True G1300334
TU1483537 lncRNA upstream 67826 47717685 ~ 47719159 (+) True srr
TU1483074 lncRNA upstream 218166 47568534 ~ 47568819 (+) True G1299893
TU1483598 lncRNA downstream 4669 47791860 ~ 47792167 (+) True G1300367
TU1483606 lncRNA downstream 16860 47804051 ~ 47805212 (+) False G1300373
TU1483605 lncRNA downstream 16976 47804167 ~ 47805212 (+) True G1300373
TU1483621 lncRNA downstream 35248 47822439 ~ 47823290 (+) False G1300384
TU1483622 lncRNA downstream 35248 47822439 ~ 47823290 (+) True G1300384
XM_021563388.2 mRNA upstream 50042 47733519 ~ 47736943 (+) True alg10
XM_021563386.2 mRNA upstream 63947 47718918 ~ 47723038 (+) False srr
XM_021563387.2 mRNA upstream 63947 47719545 ~ 47723038 (+) False srr
XM_036944453.1 mRNA upstream 343934 47412437 ~ 47443051 (+) False cerk
XR_002468673.2 mRNA downstream 211937 47999128 ~ 48001885 (+) True LOC110490177
XM_036944465.1 mRNA downstream 331583 48118774 ~ 48146269 (+) False LOC110490734
XM_036944466.1 mRNA downstream 331583 48118774 ~ 48146269 (+) True LOC110490734
XM_021563406.2 mRNA downstream 359881 48147072 ~ 48161884 (+) True slco1d1
XR_005036099.1 mRNA downstream 388253 48175444 ~ 48179144 (+) True LOC118938805
TU1483075 other upstream 216322 47569830 ~ 47570663 (+) True G1299894
TU1481549 other upstream 1470983 46314252 ~ 46316002 (+) True brd1a
TU1481520 other upstream 1526548 46254339 ~ 46260437 (+) False G1298452
TU1479009 other upstream 3134906 44649701 ~ 44652079 (+) True G1296185
TU1479092 other upstream 3205937 44547179 ~ 44581048 (+) True G1296266
TU1483849 other downstream 159177 47946368 ~ 47947892 (+) True G1300598
TU1484302 other downstream 572637 48359828 ~ 48360439 (+) True kiss2
TU1484559 other downstream 797516 48584707 ~ 48585263 (+) True G1301200
TU1484840 other downstream 1142855 48930046 ~ 48930588 (+) True G1301458
TU1485115 other downstream 1608032 49395223 ~ 49395858 (+) False G1301706

Expression Profile