RNA id: TU1483866


Basic Information

Item Value
RNA id TU1483866
length 3580
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G1300615
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 47975647 ~ 47979287 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTTTATTTACAGGAAAATACATTTTCAAGAGCAAAAGTGTAATGAGCCAAGCATATGATTTTGAGCATGCTTGAAACTACATATGGGATTCACACTGACGTAAACGAACACTCAGCGCACAGCCTCCGCGTGCAGAACGAACAGCAGTAGCAGAACAGGTGGGCTTAGAACGTTTTGTTTGTTTtccgccattaaaaaaaaatcaggaggagactagaagagaggggagacaaCGCCTGTTCTTGTCCCTCAGTCCCATGTCTCTCTGGACTGAAACAGCATCACTAGGCCCACAGAACAAAACAGATCCCATGCCCATAACATAAATGAGTTCGTTACTCTTCTTTAATAAAATCACGACAGAACACATGCATTAGTTACAAGAGGTGCCATTAAATGAACAACCATTTTGCAAATCACACTTCCAATTGTTACCGTTGCCGAAATTGGATGAATTGCCGAATGACAAAGCCAAATGCTATGACACATGtcaaatacagtacattcagatgTTCCACTTATTAGAAAAATGACAAAAGAATTGTATCAAATAATTGTTAGTATGTATGTCAGTGTTGTGGGAACATACTAGAGTGGGCCTAACTTAACAGTTCCAATTTTTTAGAATACCAAAGCATATTTGATTTAGTTTGACTTTGATCCATAGTCTTGGTTAGATAGCTAAACTCAGGGTCAACATGTATACAGTTTCAAGCATCACCTCTCGATTCTACTCATTCCATACCGTTCTCAGTCACTTTAACACTGTTTCAtccagtagtatactgtagatacttccTATCAACAGGGCTGAGCAAcacagaatgtttttttttttttacagtacagGGAAATCGGGTTTCAAACTATGTCAGGTGTCCTTTTCAAGACACAAAGTATTAGTTAGAATCCCAAGAAATGAGAAACCTGAATATGTAGGTTCTTTTCAGGCTCATAACCTATTTCATAACAGTAGTTATAACCAAGTATATTACAAAATGTCAACACTTTATTTCCATGAACAACTAACTATTCACGGTGCAAGTTATTGTATTTTTCCTCCCACAATGCTCTCTGTTTAGCATTGATTGAAAGAGACAGTTCAAATATAACATGTGATTGAGGCATCACTCACACTCACCCATTCCATGCAAAGGCAAAGTATAAGTACCATATTAACAAAGTATACATTACAATATATAGTTTACATATTTATAACTCACATACATTCTTTTCCATGTCATTTCTCTTTAAGACAGTTTAGTCTGAGATGTAGTGGTCAAAATATTGCAGTTGCACTTGTTGTACACTTGTAAATATTCTGCCATTGCGGTTACTGATTTCATTCTGATTTGTCACAGACGTTACCAAGCCAATCAAATAACCCAGCATTAGTATGTGTCACTGATTGAAAATACCGTATAGGGCAGGGATCAACTAGATTCAGTCACcggctggaacataattacaaataatgtGTAGACTGCAAAtagactgcaagaagcccaaacagatataatatttgacataatcatttcaaaccttgctcgGATCTGTATACGATTACATATCactctctctattatgcgtggcaATAATTTGACATTTTCAAAATGtcaatcacttggagctgatttactggcgtttttacagtcttttatttcCAACGataaaaatacacttttttttttttgctcttgGGGGGCCAAATTCGGGCCGCGGACCGCCAGTTGGAGAACCCTGGTATAGGGGATATACTAACACAGCCAGGCTATAAGGCTACAGCACTAGAAGGACTGGTCTTGGATTTGACCAGCGCTGAAATGACAGCTTTGTTCAGCAGAAGATTTACAGTGCATACACAGGTTTGAAGAGGCGTTATCAAACTCTAAAATCCCTAcattaaaaatacaattttatgacattatcaaaaaaagaaacaaacaaaGTTCACAGTATAAAGTCTGAGATAGGTCGCTGGTAACAAATATGAATTGCTCAACTAGATTGATTTGTACTGTGGGTGGCTATAACGAGGTAACATTTAATAAAACTCAGCAACCAAGTAAACTGTACTGAACTACAACGGAAAACAACCGTGTTTATTGTAAAACACAACACCTCTATGCTGAAGATGTGACTTATGTTTATAGGGGTGAAGATTGCGGACCGAGACGACACAAAACACCCCTGTTCCGCGGATATTACCCTAGTGACAGTGAGGAGGGCTTTGCCaggcgatgtgtgtgtgtgtgtgtgtgtgtgtgtgcgttagcgTGCGTTTGTGTGAGTGAGCCCAGTCCGAttcctgctgtgctctgctgGAGACAAGACGGAATGCCTTGAAATCCATTGTATTTGTTCAGTGAACCAGAAGCCTATAGCAACAGACCCACAGCTCTGTCACTAATGCACCAATGTCCAATAATAGCTCCTAAGACAACCATCTATTAGCCACTAACAAaggtgaaagtagtgcactatataggtctAAGGAAGGGTGTTATTTAAAATGCAGAGCAAGATATTTTGAAAGCTACTGAGGTATTTTGAATAGATTACTACACTGCAGTTCTGAGGAAATAACCTGTGAGAAACACATTCAGTCATGTTATAAGAAAGATGTCCTTATGACATAACCCCAGCGCGAGTAGCTGAGATAACAGAAAGGGACACAAATGTATTGCAGCTGTGGTACTTTACATTTGAGCAGTTGGGTTACCTTGGAAAACGGTATGCTTATTAGCCTAACCTTAATGAAGAACTTGATATGATTGTAAAAACGTGTATGTTCATTGTTTGATATCGTCCAAAGACCTTCCTAGtagtttttttttacagaaagaaGGAGAGGGTGCTCAACCAAAGTGAGTCGTGGtgaaaccccccaaaaatgtgtaGAGATCATTGGACAGGAAAAGGTGCAACGCTAGCTCaccattctttaaaaaaaaagttgaatTAGACAAGTTTAAAAGGACACGTTGTGCATTTTCCTGTCCACAGTACTGTTTTATTAACACAAACAAATCTATACACTAAAAGGAGGAAAATACTGTCTCACACAAAATAGCATAAGCCTACTACTTCAGCACTTGATAACTACGACAATAACAATGAACTATTCCCCAAATTGAGTAGGGCTAGAAATGAAAAATAATTTGACTTCATTGTTCAACCAAATAAAATGTTAGTCTCAGCTTGTCAGAGATTTTAAGTCTCTCAACCACTCAGCAATAAAAACATATAGAAAACAACAGTGTCGCTGAATTCTTAAAAATCAACCCCAACATTGGAAACGTATGGGAATATGCGTTTGGTTGAAACAAAAAAATTATACTTTTGACTTTTCTGAACATCTCGCTCTTTCTTTCATTCCTCTGCTAAGTCGGCTGTTTTGAGGGCTGAGTCCGCTCCCAGGATCTTGCAGAGTTCGTTGAGTCTGTGTTGCATCTTGGGTATTCCTGCAAGTGAAGACTCGAGGCGTTGTTTCTCCTCGGTCAGGGAGAGACGCGTAGCGGTGTCCAGCTGCTCGAACCTCCATCCTCCCTCACCATCAAACTGTAACAGGTGAGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1483830 lncRNA upstream 40851 47933386 ~ 47934796 (+) True G1300585
TU1483828 lncRNA upstream 42970 47932427 ~ 47932677 (+) True G1300583
TU1483825 lncRNA upstream 44297 47931125 ~ 47931350 (+) True G1300580
TU1483648 lncRNA upstream 108358 47848155 ~ 47867289 (+) True G1300410
TU1483621 lncRNA upstream 152357 47822439 ~ 47823290 (+) False G1300384
TU1483881 lncRNA downstream 17425 47996712 ~ 47997088 (+) True G1300629
TU1483947 lncRNA downstream 130800 48110087 ~ 48110338 (+) True G1300695
TU1483967 lncRNA downstream 202187 48181474 ~ 48202642 (+) False G1300711
TU1483973 lncRNA downstream 203718 48183005 ~ 48225469 (+) True G1300714
TU1484009 lncRNA downstream 210712 48189999 ~ 48216406 (+) True G1300736
XM_021563388.2 mRNA upstream 238704 47733519 ~ 47736943 (+) True alg10
XM_021563386.2 mRNA upstream 252609 47718918 ~ 47723038 (+) False srr
XM_021563387.2 mRNA upstream 252609 47719545 ~ 47723038 (+) False srr
XM_036944453.1 mRNA upstream 532596 47412437 ~ 47443051 (+) False cerk
XR_002468673.2 mRNA downstream 19841 47999128 ~ 48001885 (+) True LOC110490177
XM_036944465.1 mRNA downstream 139487 48118774 ~ 48146269 (+) False LOC110490734
XM_036944466.1 mRNA downstream 139487 48118774 ~ 48146269 (+) True LOC110490734
XM_021563406.2 mRNA downstream 167785 48147072 ~ 48161884 (+) True slco1d1
XR_005036099.1 mRNA downstream 196157 48175444 ~ 48179144 (+) True LOC118938805
TU1483849 other upstream 27755 47946368 ~ 47947892 (+) True G1300598
TU1483075 other upstream 404984 47569830 ~ 47570663 (+) True G1299894
TU1481549 other upstream 1659645 46314252 ~ 46316002 (+) True brd1a
TU1481520 other upstream 1715210 46254339 ~ 46260437 (+) False G1298452
TU1479009 other upstream 3323568 44649701 ~ 44652079 (+) True G1296185
TU1484302 other downstream 380541 48359828 ~ 48360439 (+) True kiss2
TU1484559 other downstream 605420 48584707 ~ 48585263 (+) True G1301200
TU1484840 other downstream 950759 48930046 ~ 48930588 (+) True G1301458
TU1485115 other downstream 1415936 49395223 ~ 49395858 (+) False G1301706
TU1485120 other downstream 1419171 49398458 ~ 49410313 (+) True LOC110490228

Expression Profile