RNA id: TU1484633


Basic Information

Item Value
RNA id TU1484633
length 356
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G1301272
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 48602651 ~ 48603258 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgtggggtggccagtcctcttctggctgtgccgggtggagattataacagaacatggtcaagatgttcaaatgttcataaatgaccagcatggtcgaataataataaggcagaacagttgaaactggagcagcagcacagtcaggtggactggggacagcaaggagtcatcatgtcaggtagtcctggggcatggtcctagggctcaggtcctccgagagagagaaagagaaaaggagagaattagagaacgcacacttagattcacacaggacaccgaataggacaggagaagtactccagatataacaaactgaccatagccccccgacacataaactactgcagcataaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1484615 lncRNA upstream 7954 48594447 ~ 48594697 (+) True G1301256
TU1484536 lncRNA upstream 60650 48541735 ~ 48542001 (+) True G1301182
TU1484532 lncRNA upstream 64474 48537840 ~ 48538177 (+) True G1301178
TU1484527 lncRNA upstream 71858 48530555 ~ 48530793 (+) True G1301173
TU1484523 lncRNA upstream 75528 48526878 ~ 48527123 (+) True G1301169
TU1484652 lncRNA downstream 4887 48608145 ~ 48608345 (+) True G1301291
TU1484676 lncRNA downstream 36595 48639853 ~ 48646791 (+) True G1301313
TU1484693 lncRNA downstream 60061 48663319 ~ 48663572 (+) True G1301329
TU1484719 lncRNA downstream 103464 48706722 ~ 48707056 (+) True G1301355
TU1484721 lncRNA downstream 104939 48708197 ~ 48708475 (+) True G1301357
XM_021563442.2 mRNA upstream 92819 48492575 ~ 48509832 (+) True LOC110490196
XM_021563441.2 mRNA upstream 93114 48492575 ~ 48509537 (+) False LOC110490196
XM_036944475.1 mRNA upstream 122774 48470101 ~ 48479877 (+) False LOC110490194
XM_036944474.1 mRNA upstream 122774 48470102 ~ 48479877 (+) True LOC110490194
XM_021563439.2 mRNA upstream 123507 48470070 ~ 48479144 (+) False LOC110490194
XM_021563465.2 mRNA downstream 146892 48750150 ~ 48752766 (+) True lamtor4
XM_021563456.2 mRNA downstream 153947 48757205 ~ 48767893 (+) False LOC110490204
XM_036944482.1 mRNA downstream 154704 48757962 ~ 48767893 (+) False LOC110490204
XM_021563457.2 mRNA downstream 155029 48758287 ~ 48767893 (+) True LOC110490204
XM_021563458.2 mRNA downstream 172198 48775456 ~ 48783034 (+) True LOC110490205
TU1484559 other upstream 17388 48584707 ~ 48585263 (+) True G1301200
TU1484302 other upstream 242212 48359828 ~ 48360439 (+) True kiss2
TU1483849 other upstream 654759 47946368 ~ 47947892 (+) True G1300598
TU1483075 other upstream 1031988 47569830 ~ 47570663 (+) True G1299894
TU1481549 other upstream 2286649 46314252 ~ 46316002 (+) True brd1a
TU1484840 other downstream 326788 48930046 ~ 48930588 (+) True G1301458
TU1485115 other downstream 791965 49395223 ~ 49395858 (+) False G1301706
TU1485120 other downstream 795200 49398458 ~ 49410313 (+) True LOC110490228
TU1486531 other downstream 1575016 50178274 ~ 50178565 (+) True G1303015
TU1486619 other downstream 1698187 50301445 ~ 50302351 (+) True G1303095