RNA id: TU1485218


Basic Information

Item Value
RNA id TU1485218
length 217
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G1301795
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 48722174 ~ 48722390 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttgtctctacccccctccaggtgtcatccATCTTccccattctgcctgccctgaccctgagcctgcctttCTGTACCTTGTAACACCACACttgattattgacctctgcctgccctgaccctgagacgacctgctgttctgtaccttttggactctgatctggattagtgacctctgcctgcccttgacctgtcgtttcgccttccccctgttctag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1485208 lncRNA downstream 18513 48703288 ~ 48703661 (-) True G1301785
TU1485201 lncRNA downstream 26893 48694989 ~ 48695281 (-) True G1301778
TU1485157 lncRNA downstream 63561 48636751 ~ 48658613 (-) True G1301737
TU1485162 lncRNA downstream 105755 48615903 ~ 48616419 (-) True G1301739
TU1484621 lncRNA downstream 123795 48598069 ~ 48598379 (-) True G1301262
TU1485237 lncRNA upstream 45569 48767959 ~ 48768228 (-) True G1301811
TU1485272 lncRNA upstream 100584 48822974 ~ 48825512 (-) False si:dkeyp-27e10.3
TU1485273 lncRNA upstream 102413 48824803 ~ 48825512 (-) False si:dkeyp-27e10.3
TU1485313 lncRNA upstream 184420 48906810 ~ 48907165 (-) True G1301877
TU1485341 lncRNA upstream 225722 48948112 ~ 48948826 (-) True G1301905
XM_021563452.2 mRNA downstream 28975 48664932 ~ 48693199 (-) True drd4-rs
XM_021563448.2 mRNA downstream 86803 48609499 ~ 48635371 (-) True LOC110490200
XM_021563446.2 mRNA downstream 141066 48543196 ~ 48581108 (-) True LOC110490198
XM_021563444.2 mRNA downstream 203562 48509737 ~ 48518612 (-) True LOC110490197
XM_021563443.2 mRNA downstream 203563 48509737 ~ 48518611 (-) False LOC110490197
XM_036945546.1 mRNA upstream 20246 48742636 ~ 48744440 (-) True LOC118938891
XM_021563453.2 mRNA upstream 22152 48744542 ~ 48747684 (-) False zgc:193726
XM_021563454.2 mRNA upstream 22152 48744542 ~ 48747684 (-) False zgc:193726
XM_036944477.1 mRNA upstream 22152 48744542 ~ 48747684 (-) False zgc:193726
XM_036944480.1 mRNA upstream 22152 48744542 ~ 48747684 (-) False zgc:193726
TU1483446 other downstream 1018136 47652510 ~ 47704038 (-) True celsr1a
TU1483202 other downstream 1502559 47217536 ~ 47219615 (-) False tbc1d22a
TU1483203 other downstream 1502559 47217536 ~ 47219615 (-) True tbc1d22a
TU1482596 other downstream 1768750 46822263 ~ 46953424 (-) True tafa5a
TU1482577 other downstream 1769580 46822263 ~ 46952594 (-) False tafa5a
TU1485276 other upstream 113204 48835594 ~ 48839151 (-) True si:dkeyp-27e10.3
TU1486102 other upstream 941561 49663951 ~ 49664296 (-) True G1302602
TU1486703 other upstream 1577074 50299464 ~ 50301007 (-) True LOC110490244
TU1487991 other upstream 2476839 51199229 ~ 51205861 (-) True LOC110490264
TU1488526 other upstream 3064241 51786631 ~ 51793354 (-) False LOC110490744

Expression Profile