RNA id: TU1486536


Basic Information

Item Value
RNA id TU1486536
length 2262
lncRNA type antisense_over
GC content 0.40
exon number 3
gene id G1303020
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 50232428 ~ 50239074 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttTAAGATTACAGATGTATTATTGCTCATCTATCATTATCACTTGCAATGTTTAAACATCGTTTCGACAACTTAAAAATTTGAGAAGAATTGTCCATTTGTACTGACTGAGGATTTACAACAATAAATACAAGAGTTGATATGCTGTAATTCCTATACTTTTGAGTTAACCATACAAGATGCTGGCGTTAACCCTGCCCATGTGATGCAGCTATTGGACCGACTAATGCTCTTTCACCCCCGGAACGCACAGGCTATGATCCTGAGACAACTGCATCGAAGCAACCATGTCCTAACAtcaaatgacccccccccccccccactacccaCACACGGGTAATGTTCTAAAAGTCAGACAAACAGACATATGAGTAGTATGGATGGTCACAGACGGGGTCTCTGACTTGGATGGTTATTATGGAGGCTGGGGGGCATAAATGCACAAATGGTAGCTCACAAGTATGACATGAACACAGTGACAGTTTAGAATGTAGGATTGGGAGCATATGGGCGTATATTCTCATGGATTTAGTTCATTCTATGCCATGTATATAAAAATGAAAAGAAACGCTGGATCCTCCCCGCTGGCTTGTACTATGGGCTTTTGGTTCAGGAGAAAACTAACAGCCGGGAATCGAAAAGTTGATCTAAAATGTTGAGTAAATTAAGTCGGACTAATAATCGTACCAGAGGAGTTTGGCCCTCAACAGGAAACCTCAGCAAACTAGCGATGACACCAAATCTTGGACATAAGAAATTGGAACAACGAGGTAAACTGAAGCCTGAAGaggtgacatttttttttttaagaacgtGTGAAATGTAGGTCCCCAACTAATTACAAGCATTATGTAATGATCCAGCCATCAAGCTATAGCCTCACTGCAGTTAAACACAACTAACCCCTGACAACGGCTATGTGTACCAATTGGTTTTAGAGCTGTAAGTACTATACACATTTGCTTACTTATTGAGGACTCGCCAAAGAAACAAGTACCAGCCTGGCTGCACATTCTGCATCTCACTGAAATAGTCTGTCacagcattcaaaaaaatcatccAGAACATTTATTACATTTATCATATAACATTTAATTGCTTATCTTTATAATGAGACAGATGTTTAATTTCAAAAAGGTAAGATATTAGATGGGTGGAGGAAAGATAGAAAAATCAACATTTCTACATAAATATCTAAATATATCCCCTTGTAATGATCTCCCATACCTGTCATGCCTCTAATTAAGCAATAAACTggctaccaacgtaattagaacagtaaaaatacatgttttgtcatggtGGTATAAGGTCTAATATACCagggctttcagccaatcagcattcagggctcgacctacccagtttataattcaGTATAATGCTTTGAAAGGAGAATCTAGCTCCGGACATCGTGGATGTCATAAACTCTGGTTGGCGGAATACTTTTCATATAACTTCAACACTAGCATCATCGTGAGAGCAGTGTGGGAGCTGaggaacaacatttattattGAGTGACTGTTGGACAGGCAGCTGAGATGGATTCCCTGTGTTTGAGTGATTGGTTGAGACCTCCCTCTCCCACCTATCACAGGGAAAGAACCCGGCCCCACGCCTGTCTCGGTCCAGTTTGATTGAGGGAAAAGGACAATCAACGCATTAAAACATACCTAAAAACAAGACAAGGAAAAAATCTGAATCAAATGATCAAATGAAAGACAGGATATGATTGGAcccaatgacccccccccccccccacacacctctTCATCTAATCCCTTTCAATTTATCtttgaaaacaaaacacaaatcAAGAGTAGGAAAAGACAAACAACAGGACATGAACCACATGTCCATCACTAAATCTTCAGAGGTCATCgttcagattttttgttgttgtacatttcagttttttttgtttttcttcatcAATAGTTTCTCCATCTTTAGCTTTTAAACGAACAATAAAAAGATCTCGCAAGGGAGTTTTTACGTACGACTGACTGACACACAAGTAGCTAAGAGAAAACCAAATGGTGGAAACTCCAGGAGACGCTAGCTAAGGAGCGCAAAATGGCAGGAGCAGCTCAAAAAAAGGTTAGTTACACTATTCTAgcgtaaataaataaacactgcCAAAGCGCAGGTAAAGCCACGCCCTCCACTCTGACCAATAAGCACAGAGCTCCTCCTCTCGCCTTTCTTCTGGGTTCTGTACGATTTATGGAGCCTTGGTATTTTCTTCATTTCAGAGTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1486557 lncRNA upstream 6027 50223183 ~ 50230624 (+) True G1303040
TU1486535 lncRNA upstream 39500 50196844 ~ 50197151 (+) True G1303019
TU1486524 lncRNA upstream 49526 50182921 ~ 50187125 (+) True LOC110490239
TU1486530 lncRNA upstream 60219 50176231 ~ 50176432 (+) True G1303014
TU1486515 lncRNA upstream 76522 50159846 ~ 50160129 (+) True G1302999
TU1486541 lncRNA downstream 44926 50284000 ~ 50284179 (+) True G1303024
TU1486621 lncRNA downstream 66573 50305647 ~ 50306222 (+) True G1303097
TU1486632 lncRNA downstream 102698 50341772 ~ 50343909 (+) True G1303108
TU1486678 lncRNA downstream 209405 50448479 ~ 50448734 (+) True G1303152
TU1486903 lncRNA downstream 285819 50524893 ~ 50525189 (+) True G1303357
XM_021563509.2 mRNA upstream 50526 50182820 ~ 50186125 (+) False LOC110490239
XM_021563504.2 mRNA upstream 66386 50161944 ~ 50170265 (+) True LOC110490236
XR_005036316.1 mRNA upstream 212823 50019617 ~ 50023828 (+) True LOC118938923
XM_021563501.2 mRNA upstream 372951 49838523 ~ 49863700 (+) True LOC110490234
XM_036944521.1 mRNA upstream 443943 49718800 ~ 49792708 (+) True foxp2
XM_021563522.2 mRNA downstream 82275 50321349 ~ 50333454 (+) False cdkn1d
XM_021563523.2 mRNA downstream 82403 50321477 ~ 50333454 (+) False cdkn1d
XM_021563521.2 mRNA downstream 83547 50322621 ~ 50333454 (+) False cdkn1d
XM_021563524.2 mRNA downstream 84125 50323199 ~ 50333454 (+) True cdkn1d
XM_021563526.2 mRNA downstream 115761 50354835 ~ 50357815 (+) True LOC110490251
TU1486531 other upstream 58086 50178274 ~ 50178565 (+) True G1303015
TU1485120 other upstream 826338 49398458 ~ 49410313 (+) True LOC110490228
TU1485115 other upstream 840793 49395223 ~ 49395858 (+) False G1301706
TU1484840 other upstream 1306063 48930046 ~ 48930588 (+) True G1301458
TU1484559 other upstream 1651388 48584707 ~ 48585263 (+) True G1301200
TU1486619 other downstream 62371 50301445 ~ 50302351 (+) True G1303095
TU1486590 other downstream 120136 50359210 ~ 50372207 (+) True LOC110490250
TU1487193 other downstream 508288 50747362 ~ 50747715 (+) True G1303641
TU1487387 other downstream 832751 51071825 ~ 51073294 (+) True G1303804
TU1487555 other downstream 1060329 51299403 ~ 51299761 (+) True G1303950

Expression Profile