RNA id: TU1486541



Basic Information


Item Value
RNA id TU1486541
length 180
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1303024
representative True

Chromosome Information


Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 50284000 ~ 50284179 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGTTCGGCGCATGAGAcatatacaatttgatttgacatttcaTGAggtcaatctagagaaaatgggTTCTGGAAGCAAATAAATACTGCCACCATGGGGTGGGTTCTGGTAATGTAGAGCTCTTGCACCTAAATCTAGTCACATTGATAACGGAGTAAGGACTAAAGAGTAACTCTaata

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1486537 lncRNA upstream 44926 50232428 ~ 50239074 (+) False G1303020
TU1486536 lncRNA upstream 44926 50236651 ~ 50239074 (+) True G1303020
TU1486557 lncRNA upstream 53376 50223183 ~ 50230624 (+) True G1303040
TU1486535 lncRNA upstream 86849 50196844 ~ 50197151 (+) True G1303019
TU1486524 lncRNA upstream 96875 50182921 ~ 50187125 (+) True LOC110490239
TU1486621 lncRNA downstream 21468 50305647 ~ 50306222 (+) True G1303097
TU1486632 lncRNA downstream 57593 50341772 ~ 50343909 (+) True G1303108
TU1486678 lncRNA downstream 164300 50448479 ~ 50448734 (+) True G1303152
TU1486903 lncRNA downstream 240714 50524893 ~ 50525189 (+) True G1303357
TU1486959 lncRNA downstream 296912 50581091 ~ 50581245 (+) True G1303412
XM_021563509.2 mRNA upstream 97875 50182820 ~ 50186125 (+) False LOC110490239
XM_021563504.2 mRNA upstream 113735 50161944 ~ 50170265 (+) True LOC110490236
XR_005036316.1 mRNA upstream 260172 50019617 ~ 50023828 (+) True LOC118938923
XM_021563501.2 mRNA upstream 420300 49838523 ~ 49863700 (+) True LOC110490234
XM_036944521.1 mRNA upstream 491292 49718800 ~ 49792708 (+) True foxp2
XM_021563522.2 mRNA downstream 37170 50321349 ~ 50333454 (+) False cdkn1d
XM_021563523.2 mRNA downstream 37298 50321477 ~ 50333454 (+) False cdkn1d
XM_021563521.2 mRNA downstream 38442 50322621 ~ 50333454 (+) False cdkn1d
XM_021563524.2 mRNA downstream 39020 50323199 ~ 50333454 (+) True cdkn1d
XM_021563526.2 mRNA downstream 70656 50354835 ~ 50357815 (+) True LOC110490251
TU1486531 other upstream 105435 50178274 ~ 50178565 (+) True G1303015
TU1485120 other upstream 873687 49398458 ~ 49410313 (+) True LOC110490228
TU1485115 other upstream 888142 49395223 ~ 49395858 (+) False G1301706
TU1484840 other upstream 1353412 48930046 ~ 48930588 (+) True G1301458
TU1484559 other upstream 1698737 48584707 ~ 48585263 (+) True G1301200
TU1486619 other downstream 17266 50301445 ~ 50302351 (+) True G1303095
TU1486590 other downstream 75031 50359210 ~ 50372207 (+) True LOC110490250
TU1487193 other downstream 463183 50747362 ~ 50747715 (+) True G1303641
TU1487387 other downstream 787646 51071825 ~ 51073294 (+) True G1303804
TU1487555 other downstream 1015224 51299403 ~ 51299761 (+) True G1303950

Expression Profile