RNA id: TU1486632


Basic Information

Item Value
RNA id TU1486632
length 2107
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G1303108
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 50341772 ~ 50343909 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGAATACAGTATAGGTCATTTAAGTTCAAATTCATTGAGGTGGTATCCCAAAATATATCGTAAATTCCCTTGGGAAGAATAAAAGATAGGAGTCAACAGTTTTGAAAAATACCATTTGCTTTTCTTGAAAAAAAAAACGTAGGCTCATTAAAACATGAATTTAAAGTGCACATAcggggaaaaaatgaacatttaccACAGATTAAGAACATACATTCGACAATGATAAAATTAAATACACATTCCATGTCATCAAGTTTAGCAGGCCCTGGATCAGCTGAAATGCACTTGTGGCCTTGGTTAAAACCACTACAGTAATTTAGCAACTGATACCAATCCAACCAGAAGAACTACTTGTACCGTTTTAATTTATGTACCTACAGTAAATAAAATCAGTATACCTTTAAATAATTTTGATAAGGAAAATATTTCAGATGCGTGCAGTTAATGTTAAATGACCGTTAAGACTTACCacgtttacatgcacaccaatatTCCGTTATTATTCGGGGTACTCAAGTACTCTCTTGAGTTGACACATGTAAACATCATATCTCGTTTACAATAACCCGAAAAAGTTTGTATCCCGGTTATGAGAAACCCGGATAAAATGCCTTGGATTTGCTGATCTTAGATGGGATACTGTGGCATGTATCCCGTTTACTGTTGTTTTTCGCAGTCTGTGTAGGCTCAGTTTTAGGTATGATGGGTGTTgtgtgatgttttcatctgattgttaaacaaatcacttcaaaaagtaggcaAAATGCTCAGTTCCATCCACCATAATAATTTATTTTGCCGATACTCCATCCTGGACCGTGTAGCGTAATTTAGACAACTTTCTGTTTACAATTTCCGACATTTGGAAGGACATTTGTTTGTCAACTATAGTCTTCTGTCATAACTTGTTGCCCcagaagactaaataaagtagTGCTCAACAGAATAATGTCTTACATTGACAGAACGAGTGCATTAGTAATCTAGTTAAAACCGGTAAAGTTGTCTGTTTCGTTTAGGGACCCGGGGAGAACAGTGAAAAGATTTGGTCTTTGCAAAATGCCCAAATGTCATCAGTTTGACTGGTTTTAGTGAAATTAAAAGCTGAGAAAACGATTAAATTGGTTTATGATAAGACTTTAGTCTGTCTTgggtgcatattttatgtggttgaaatactgtctGCTTGCATAACGGTGTCAACGAGAACACACGCACTAGCATTTCCTCAAGAGATGCTGAAAGAATTcgtatttctccactcctgtttccgagacaaaattaacatttgttgtgtaatttCACTGCAAGAAATGCATAATTCCGcaagagttaatattatattacgcTACATGTGAAAGGTTATAGGCCATATTTCAGGTAATATTTAACCCATATCAATTTAAATGAGGAATAATCCGTTTATTCATCGGTACAGGGATACCTGTGAGCGGGATATCAAAAGTGCATGTAAACAGCTTAACCCGAATAAGACCTTCTGCGGGATATGAGCTACTGTCCACAATACCTTGCGCATGTAAACGTGGTCACTGACTACAGTGTGTGCTACAGGCAATGACTAAAAATCCGCctagtggatgtgtgtgtgagattcTATGAGTGAGTGATGGAGAGTTTTGTGTGTCTTTGAAATCTGATCTCTACTAAGCAAATGAGCAGATTCAATCAATCATTCTATACAAGTAATCATTATACACTCCAGTAAACTGATAAAGGAATTGGAATAATCGTTAGCTGCTTGGAACTTCCAATCTCAGACCACAAACATTTAGAGGGCCCTGCCCCCACTCGTAAAAGGCGCTGAAGTAATatcttaataaaaataaaaaaaaacgcgTTTCTGACCAAATATATACATAAACTGGACATACACATTCATAGACATGTTGTACATACATCTACAGTAGTGATCAGTGGACATAGTCTGACTGACAGGCAGTAGGCCCCATAGGGAAGGAGTAGGAAACAACATGGCCCCCGTGAGGAAGGCTTCACAGCTCGTGTGTCCGTGCCCGTCTCTCCCTCCACATGGCCCGAATCTCAGTCACGATCAGCGGCAAGATGAAGACTATGCTGCACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1486621 lncRNA upstream 35550 50305647 ~ 50306222 (+) True G1303097
TU1486541 lncRNA upstream 57593 50284000 ~ 50284179 (+) True G1303024
TU1486537 lncRNA upstream 102698 50232428 ~ 50239074 (+) False G1303020
TU1486536 lncRNA upstream 102698 50236651 ~ 50239074 (+) True G1303020
TU1486557 lncRNA upstream 111148 50223183 ~ 50230624 (+) True G1303040
TU1486678 lncRNA downstream 104570 50448479 ~ 50448734 (+) True G1303152
TU1486903 lncRNA downstream 180984 50524893 ~ 50525189 (+) True G1303357
TU1486959 lncRNA downstream 237182 50581091 ~ 50581245 (+) True G1303412
TU1486969 lncRNA downstream 240914 50584823 ~ 50585207 (+) True G1303422
TU1486975 lncRNA downstream 253181 50597090 ~ 50597300 (+) True G1303428
XM_021563522.2 mRNA upstream 8318 50321349 ~ 50333454 (+) False cdkn1d
XM_021563523.2 mRNA upstream 8318 50321477 ~ 50333454 (+) False cdkn1d
XM_021563521.2 mRNA upstream 8318 50322621 ~ 50333454 (+) False cdkn1d
XM_021563524.2 mRNA upstream 8318 50323199 ~ 50333454 (+) True cdkn1d
XM_021563509.2 mRNA upstream 155647 50182820 ~ 50186125 (+) False LOC110490239
XM_021563526.2 mRNA downstream 10926 50354835 ~ 50357815 (+) True LOC110490251
LOC110490250 mRNA downstream 14530 50358439 ~ 50372219 (+) False LOC110490250
XM_021563542.2 mRNA downstream 217106 50561015 ~ 50577585 (+) True LOC110490256
XM_021563554.2 mRNA downstream 832139 51176048 ~ 51199225 (+) True LOC110490263
XM_036944562.1 mRNA downstream 872998 51216907 ~ 51273536 (+) False LOC110490740
TU1486619 other upstream 39421 50301445 ~ 50302351 (+) True G1303095
TU1486531 other upstream 163207 50178274 ~ 50178565 (+) True G1303015
TU1485120 other upstream 931459 49398458 ~ 49410313 (+) True LOC110490228
TU1485115 other upstream 945914 49395223 ~ 49395858 (+) False G1301706
TU1484840 other upstream 1411184 48930046 ~ 48930588 (+) True G1301458
TU1486590 other downstream 15301 50359210 ~ 50372207 (+) True LOC110490250
TU1487193 other downstream 403453 50747362 ~ 50747715 (+) True G1303641
TU1487387 other downstream 727916 51071825 ~ 51073294 (+) True G1303804
TU1487555 other downstream 955494 51299403 ~ 51299761 (+) True G1303950
TU1487591 other downstream 1007484 51351393 ~ 51359487 (+) True atxn7l1

Expression Profile