RNA id: TU1491561


Basic Information

Item Value
RNA id TU1491561
length 1352
lncRNA type antisense_over
GC content 0.51
exon number 1
gene id G1307435
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 54088578 ~ 54089929 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGCTGAAacattgttttattcaggcacATAAGGATCACATCTCCATAGACAATATGGCCTTTAGTGTTCAGAATCAGACACCATACCCCCCCCGAACCATTTTACCCCGATCACCCCACACAGCAAGGCAGCACAGAATGCATTTAAAGTGCTTAGCATTGTCAAGTACAGTCCATTATAATTAATATTTCACCAACCATACATTAGCCATTCAATGAATTTACCCAGTCATTCAGAAACAAACAAAGAGAACAATTCATAACTTTTCATTTAAGGTCTTCGAGACCTGACACATTGTAACTAAAGCGGACCTGCTACTAGAACTAAAATTGTGACACCCAatacagcagcagcagtgtataGTAGAGGCAGCTTTCTGAGTGAATGTGTAACAACTATTCACAATCTAACAGTTTGTCAGAAAATGGAGTGCCGGTCTCTAAGCACCACAACCAAAAACCACATTTATGGGAAAATGCTCACATTATGGGTCATGAAAGGTCAAACCAGGAATTCTTCCCCTAAACCCCTTAGTGACCCAGAAGTTAGTGGTTGCAATTTACAGGGTAAACAAAAGGGTGATCCTGAAAGGTTTGAACATTGAACACACCCCATACACTCCAGGACTGGGGTAGGCAATGAACCCAGCACTGGGTGGGTATGCAGTCTGCCACATGAAATGGAAAATGTCAGTTTCTCCTTTTAAGTGCAAAGCAATATTCTCTCCTCCACCTGTATCCTCCATGTTGGCTCAAGACGCCACAATAGCTCAGTCCTGGTAGAGCAGGAAGCCAGAGAATGTGCTGTACTTCCAGCTGCTGCCATAGATGGAGCCACGGTGCAGCCGCAGCCACACCTGGTCTCCCTGGTACAGCTGCAGGATGGAGTGGTTGCTGGCCGTCTCGTGGTCCGGAGCCCCGTCGTTGGCGTACGCAGACACCATCACCTCGTCATTGCGCATCAGGTTGACATATAGCGGCACGTTGACCGCCAGCTTGAGGATGTGGAAGAGGAAGACGTAGGTGCCGTTGGCTGGGCAGATGAAACGACCCACGTTGGTGTTGAACATTTCCCCCAGGTTGCTGTGGAGCTGGTCAAAGGTGATGGGCTGGTCCAGGGTGCCCGGGGTGTAGTTGGCTGTGCGGGCTGCTGTGAAGGCCACGCGGAGGGGCTGGGGATGCTGGGGGAGTGGGTACATGGGTACGTGCATCAGGGTGTGGGGGGCATGAGGGGTCACCTGGGGGGTGAGGTCCATGCCAACACCCTGCAGCGAGTCGCCGTGGGCGGAGTCCACCAGAGAGTAGTTGCCCTCCCGGTCTGGGCTGCTCACCTGGGAGGAGTCACTCCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1491560 lncRNA downstream 276 54087803 ~ 54088302 (-) True G1307434
TU1491559 lncRNA downstream 1402 54086796 ~ 54087176 (-) True G1307433
TU1491558 lncRNA downstream 3028 54085261 ~ 54085550 (-) True G1307432
TU1491557 lncRNA downstream 3360 54084774 ~ 54085218 (-) True G1307431
TU1491504 lncRNA downstream 62421 54024145 ~ 54026157 (-) True G1307386
TU1491579 lncRNA upstream 28329 54118258 ~ 54120317 (-) True G1307453
TU1491580 lncRNA upstream 30534 54120463 ~ 54121361 (-) True G1307454
TU1491595 lncRNA upstream 55635 54145564 ~ 54145925 (-) True G1307469
TU1491598 lncRNA upstream 59444 54149373 ~ 54149670 (-) True G1307472
TU1491600 lncRNA upstream 62477 54152406 ~ 54152642 (-) True G1307474
XM_036944615.1 mRNA downstream 271536 53788678 ~ 53817042 (-) True sult4a1
XM_036945548.1 mRNA downstream 301881 53756479 ~ 53786697 (-) False efcab6
XM_021563620.2 mRNA downstream 504239 53578839 ~ 53584339 (-) True LOC110490308
XM_036944604.1 mRNA downstream 512412 53555038 ~ 53576166 (-) True aldh1l2
XM_021563618.2 mRNA downstream 540347 53528221 ~ 53548231 (-) False etnk1
XM_036944637.1 mRNA upstream 202228 54292157 ~ 54302557 (-) False LOC110490327
XM_036944639.1 mRNA upstream 215079 54305008 ~ 54371524 (-) False LOC110490750
XM_036944638.1 mRNA upstream 215079 54305008 ~ 54371525 (-) True LOC110490750
XM_021563654.2 mRNA upstream 284696 54374625 ~ 54380846 (-) True LOC110490329
XM_036944642.1 mRNA upstream 321374 54411303 ~ 54419096 (-) False LOC110490332
TU1491414 other downstream 166450 53899310 ~ 53922128 (-) True G1307309
TU1491355 other downstream 331230 53756515 ~ 53757348 (-) True efcab6
TU1490123 other downstream 1026298 53054849 ~ 53062280 (-) False G1306232
TU1491599 other upstream 60115 54150044 ~ 54150540 (-) True G1307473
TU1492053 other upstream 677043 54766972 ~ 54768422 (-) True G1307901
TU1492936 other upstream 1058846 55148775 ~ 55152111 (-) True LOC110490337
TU1493091 other upstream 1328394 55418323 ~ 55419245 (-) True LOC110490757
TU1493163 other upstream 1466303 55556232 ~ 55556574 (-) True G1308831

Expression Profile