RNA id: TU1491580


Basic Information

Item Value
RNA id TU1491580
length 848
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G1307454
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 54120463 ~ 54121361 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatgacaaagtgttatattgataggtgcCATAATGCTGTCCTGCTTGAGCATTCTAAATGTAActtgtacttttgggtgtcagggaaaatgtaaggagtaaaaagtacattattttctttaggaatgtagtggagtaaaagttgtcaaaaatataaatagtaaagtacagataccccccaaaaaagtagtacttaaaagtatttttactttagtactttacaccactgcagtaggcctacatgcaatagaccattgccatatatggatctttgccatttactttgaactggactgtgtttacagcatgagtggtcATGAGTAGATtcacttgttttgagatcaaagtgagagTTGCATGTAGCCAcatgcacattttgttcatatcctttgcttgTTAGGGAATTATTAGACCTGTCTATGTAGTAATGGTATGAGactaataatgcattttattttgttaagTGGTtacttgcatcaaacaacaacattttcagtcaccccCTTGCCTGAaagtctcatggaatgtaggccgacattgaacaccacacattggctgctactgtaggctgaatgatagaacagctatttccatgttagaatgttatgggatgcattttctccttTGATTTTGATGgcaggccactctggtaggcctacattatgagcAAATAgtcacagtagcctacttggccactgttaaaactgtgtAACTTAAAGTAGGTACagtctcagtgttcacagtaaacacgcACTGGAAGtcgcacagaattttcacaatgttcaagtttgcactcagcagacctgaaatttgctcagtgccggaaagcatttgagggaacattgctac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1491579 lncRNA downstream 146 54118258 ~ 54120317 (-) True G1307453
TU1491561 lncRNA downstream 30534 54088578 ~ 54089929 (-) True G1307435
TU1491560 lncRNA downstream 32161 54087803 ~ 54088302 (-) True G1307434
TU1491559 lncRNA downstream 33287 54086796 ~ 54087176 (-) True G1307433
TU1491558 lncRNA downstream 34913 54085261 ~ 54085550 (-) True G1307432
TU1491595 lncRNA upstream 24203 54145564 ~ 54145925 (-) True G1307469
TU1491598 lncRNA upstream 28012 54149373 ~ 54149670 (-) True G1307472
TU1491600 lncRNA upstream 31045 54152406 ~ 54152642 (-) True G1307474
TU1491619 lncRNA upstream 68067 54189428 ~ 54189897 (-) True G1307493
TU1491620 lncRNA upstream 68615 54189976 ~ 54237714 (-) True G1307494
XM_036944615.1 mRNA downstream 303421 53788678 ~ 53817042 (-) True sult4a1
XM_036945548.1 mRNA downstream 333766 53756479 ~ 53786697 (-) False efcab6
XM_021563620.2 mRNA downstream 536124 53578839 ~ 53584339 (-) True LOC110490308
XM_036944604.1 mRNA downstream 544297 53555038 ~ 53576166 (-) True aldh1l2
XM_021563618.2 mRNA downstream 572232 53528221 ~ 53548231 (-) False etnk1
XM_036944637.1 mRNA upstream 170796 54292157 ~ 54302557 (-) False LOC110490327
XM_036944639.1 mRNA upstream 183647 54305008 ~ 54371524 (-) False LOC110490750
XM_036944638.1 mRNA upstream 183647 54305008 ~ 54371525 (-) True LOC110490750
XM_021563654.2 mRNA upstream 253264 54374625 ~ 54380846 (-) True LOC110490329
XM_036944642.1 mRNA upstream 289942 54411303 ~ 54419096 (-) False LOC110490332
TU1491414 other downstream 198335 53899310 ~ 53922128 (-) True G1307309
TU1491355 other downstream 363115 53756515 ~ 53757348 (-) True efcab6
TU1490123 other downstream 1058183 53054849 ~ 53062280 (-) False G1306232
TU1491599 other upstream 28683 54150044 ~ 54150540 (-) True G1307473
TU1492053 other upstream 645611 54766972 ~ 54768422 (-) True G1307901
TU1492936 other upstream 1027414 55148775 ~ 55152111 (-) True LOC110490337
TU1493091 other upstream 1296962 55418323 ~ 55419245 (-) True LOC110490757
TU1493163 other upstream 1434871 55556232 ~ 55556574 (-) True G1308831

Expression Profile