RNA id: TU1493063


Basic Information

Item Value
RNA id TU1493063
length 558
lncRNA type antisense_over
GC content 0.44
exon number 3
gene id G1308739
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 55380427 ~ 55382684 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaacatttattttcAGGTTTCACTTGTACATGTTCATATCAGGACACAGAGACCAAGACAGTAGTTCATTACCTCACATACAGGATTTTTCTGCTGGCAAAACAAACTACAGATGAAACACTTAGGTAAATACAGACACATTGTGCTGCTGTTGAGAGTATAATGGTTTAGCTACTTAGAGACAGAAAGAGCTACTGGTGattatcaatgtgtgtgtgtgtgtgtcagagcattTCTTCTGTTCCTGTGGGTATGAATGATGCGGGTCTTAATGATTCAGGTGGGATGGACTGCGCGTCTGTGTCTCACATCTGCTCTCCCAGGTCCAACACTCTGAACTTATCCTGGTTATAGAAACAGGCTTTTACCACCCGACCACCAAAGAACCTCCCGTTCAGATCCACCACAGCTTTGATGGCTGACTCGACTCTCTCAAACTCCAGAAATATCCTCACTGCTTCATCATCTGTCACCTGAGCAATCTCAAAGATGACACACTTGATGACCTTGCCGTATTTCTCACACTCTTCTTTGGTCTCCCCTTCCAAATCttcatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1493074 lncRNA downstream 22019 55358084 ~ 55358408 (-) True G1308746
TU1493073 lncRNA downstream 22639 55357339 ~ 55357788 (-) True LOC110490348
TU1493069 lncRNA downstream 23221 55355746 ~ 55357206 (-) False LOC110490348
TU1493070 lncRNA downstream 23355 55355672 ~ 55357072 (-) False LOC110490348
TU1493071 lncRNA downstream 23355 55355746 ~ 55357072 (-) False LOC110490348
TU1493084 lncRNA upstream 14644 55397328 ~ 55397533 (-) True G1308756
TU1493085 lncRNA upstream 15085 55397769 ~ 55398048 (-) True G1308757
TU1493131 lncRNA upstream 79820 55462504 ~ 55462866 (-) True G1308800
TU1493133 lncRNA upstream 84037 55466721 ~ 55467046 (-) True G1308802
TU1493139 lncRNA upstream 99854 55482538 ~ 55482758 (-) True G1308808
XM_036944676.1 mRNA downstream 6323 55357114 ~ 55374104 (-) False LOC110490348
XM_036944677.1 mRNA downstream 6329 55357114 ~ 55374098 (-) False LOC110490348
XR_005036132.1 mRNA downstream 7943 55371010 ~ 55372484 (-) True LOC118938816
XM_021563680.2 mRNA downstream 37728 55332272 ~ 55342699 (-) True LOC110490346
XM_036944671.1 mRNA downstream 49675 55262944 ~ 55330752 (-) False LOC110490344
XM_036944685.1 mRNA upstream 34485 55417169 ~ 55433292 (-) False LOC110490757
XM_036944682.1 mRNA upstream 34485 55417169 ~ 55435524 (-) False LOC110490757
XM_036944684.1 mRNA upstream 34485 55417169 ~ 55438946 (-) False LOC110490757
XM_036944683.1 mRNA upstream 34485 55417169 ~ 55438953 (-) False LOC110490757
XM_036944686.1 mRNA upstream 77666 55460350 ~ 55566110 (-) False LOC110490351
TU1492936 other downstream 228316 55148775 ~ 55152111 (-) True LOC110490337
TU1492053 other downstream 612005 54766972 ~ 54768422 (-) True G1307901
TU1491599 other downstream 1229887 54150044 ~ 54150540 (-) True G1307473
TU1491414 other downstream 1458299 53899310 ~ 53922128 (-) True G1307309
TU1491355 other downstream 1623079 53756515 ~ 53757348 (-) True efcab6
TU1493091 other upstream 35639 55418323 ~ 55419245 (-) True LOC110490757
TU1493163 other upstream 173548 55556232 ~ 55556574 (-) True G1308831
TU1493247 other upstream 363601 55746285 ~ 55747753 (-) True G1308906
TU1493546 other upstream 671807 56054491 ~ 56055064 (-) True G1309187
TU1494769 other upstream 1589057 56971741 ~ 56973518 (-) True G1310261

Expression Profile