RNA id: TU1493195


Basic Information

Item Value
RNA id TU1493195
length 501
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G1308863
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 55664349 ~ 55664849 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtttaattgaaaattgttttgtatgtttagaacatcctaaagcttgattctgcacttagtttgacctgtttagtcgacatataatatgtcatttttaagttttgatgcgcaacttttcgggaccagaggacattttgggtgcatttcagctgatattgttagcagatgctaatacaaagacacaagacttgaaaccaaacgatgttttgggtaagtatgaacccttccagtacattctgaacgaagaccatcaaaggtaagggaatatttatgctgaaattgtgtgtttctgttgactccaacatagcggagaaatattgcttatgtctgagcgccgtctcagaatattgaatagtgagcgatttctgtaacgttaaaaagaaatgtaacaaagcgattgcattaagaagcagtgtatctttctaactatatgtagaacatgtatatttagtcaaagtttatgatgtctatttacgttatcttgcggcgctatctatattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1493191 lncRNA downstream 5723 55658414 ~ 55658626 (-) True G1308859
TU1493182 lncRNA downstream 25914 55638227 ~ 55638435 (-) True G1308850
TU1493177 lncRNA downstream 32449 55631128 ~ 55631900 (-) True G1308845
TU1493161 lncRNA downstream 123983 55537354 ~ 55540366 (-) True G1308829
TU1493149 lncRNA downstream 132547 55510209 ~ 55531802 (-) True G1308817
TU1493208 lncRNA upstream 20132 55684981 ~ 55685191 (-) True G1308872
TU1493209 lncRNA upstream 21601 55686450 ~ 55686673 (-) True G1308873
TU1493230 lncRNA upstream 48987 55713836 ~ 55714208 (-) True G1308890
TU1493231 lncRNA upstream 49520 55714369 ~ 55714606 (-) True G1308891
TU1493264 lncRNA upstream 110965 55775814 ~ 55776066 (-) True G1308923
XM_021563700.2 mRNA downstream 40700 55617681 ~ 55623649 (-) True LOC110490355
XM_021563699.2 mRNA downstream 59880 55584646 ~ 55604469 (-) True LOC110490354
XM_021563697.2 mRNA downstream 65680 55584646 ~ 55598669 (-) False LOC110490354
XM_021563698.2 mRNA downstream 65680 55584646 ~ 55598669 (-) False LOC110490354
XM_036944690.1 mRNA downstream 98239 55460350 ~ 55566110 (-) True LOC110490351
XM_021563719.2 mRNA upstream 989901 56654750 ~ 56658042 (-) False LOC110490369
XM_021563721.2 mRNA upstream 989901 56654750 ~ 56658049 (-) True LOC110490369
XM_021563717.2 mRNA upstream 1046218 56711067 ~ 56776535 (-) False LOC110490368
XM_021563718.2 mRNA upstream 1046218 56711067 ~ 56776535 (-) True LOC110490368
XM_021563713.2 mRNA upstream 1061462 56726311 ~ 56730594 (-) True LOC110490364
TU1493163 other downstream 107775 55556232 ~ 55556574 (-) True G1308831
TU1493091 other downstream 245104 55418323 ~ 55419245 (-) True LOC110490757
TU1492936 other downstream 512238 55148775 ~ 55152111 (-) True LOC110490337
TU1492053 other downstream 895927 54766972 ~ 54768422 (-) True G1307901
TU1491599 other downstream 1513809 54150044 ~ 54150540 (-) True G1307473
TU1493247 other upstream 81436 55746285 ~ 55747753 (-) True G1308906
TU1493546 other upstream 389642 56054491 ~ 56055064 (-) True G1309187
TU1494769 other upstream 1306892 56971741 ~ 56973518 (-) True G1310261
TU1495171 other upstream 1460965 57125814 ~ 57143499 (-) True LOC110490385
TU1495287 other upstream 1577831 57242680 ~ 57247843 (-) False LOC110490387

Expression Profile