RNA id: TCONS_00044353


Basic Information

Item Value
RNA id TCONS_00044353
length 784
RNA type mRNA
GC content 0.53
exon number 2
gene id XLOC_022485
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 32149269 ~ 32194397 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAGGAAGAGCGAATCTGACACAACAGATCAATGGTGCGGCTCCCGGTGCGGTCCACGCATCACACGCGGAAGAATGAAGGAGATTCCGCGGCTACCCTCAGAAATAACAGGCTCGTGAACGAGAAAAAAGGCTTTGATCAGGAAAAAGATCCCAGCTCGTGATAACGGCGGAAAGCAGATGTGAAGCCAGTTCTGAGTAGACAGACAGCGACATGGAAATTGGCAAAAAAGCAACGCGGATGTCAAGAACCACATACATCACCAAAGGATCTCTTGGGGTCAAATGTGCCGAGAACATGTCCAGGACATATTTAACTATATTCAAagcaAAATGACCTGTGTTCAAAGTCAACATGGAGTCCAGTCCTACGAGAGCTCCCTCTTCAGCTCAGAGTTTCTGAATCCTGACTTCACCTCCAGGTTGGCCATGGATGTGACCGAGCAGCGGGAACAGCTCTCTGCGCCCTCCCTACCCAGCATCACTTCTCTGGTTGGGGGATACGTTGGCGAGTTTGACACCTACTCATGCCAGATCGCCACAGGAGCTGCTTCTACCTGTGTGGGCAGCACCTCCGGGCAGCTGGACTCCTTCAAGCTGGATGACCTCCAGGTGTATGGCTGCTACCCGGGCACGTTTGCTTTGAGCTACCTGGACGAGACGCTGTCCTCTTCGGGTGGGTCAAACTGCTTTGGAAGTCCGGCATCTGCACCGTCTCCCTCCACCCCGGGATACCAGCACATGTCTGCATGGGACAGCACCTTTGGTCCCTGCTCTCCTGACGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0071376 cellular response to corticotropin-releasing hormone stimulus biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0035259 glucocorticoid receptor binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko04010 MAPK signaling pathway
ko04151 PI3K-Akt signaling pathway
ko04925 Aldosterone synthesis and secretion
ko04927 Cortisol synthesis and secretion
ko04934 Cushing syndrome
ko03000 Transcription factors
ko03310 Nuclear receptors

ZFIN:

id description
ZDB-GENE-040704-11 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and glucocorticoid receptor binding activity. Predicted to be involved in cellular response to corticotropin-releasing hormone stimulus and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in axis; myotome; nervous system; and pectoral fin. Orthologous to human NR4A1 (nuclear receptor subfamily 4 group A member 1).

Ensembl:

ensembl_id ENSDART00000155905

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045036 lncRNA downstream 14467 32111318 ~ 32141320 (-) False XLOC_022482
TCONS_00045037 lncRNA downstream 14480 32119690 ~ 32141307 (-) True XLOC_022482
TCONS_00044345 lncRNA downstream 55773 32093948 ~ 32100014 (-) True XLOC_022481
TCONS_00045035 lncRNA downstream 147991 32006905 ~ 32007796 (-) True XLOC_022480
TCONS_00044325 lncRNA downstream 510052 31644332 ~ 31645735 (-) False XLOC_022471
TCONS_00045039 lncRNA upstream 185189 32347999 ~ 32352704 (-) True XLOC_022489
TCONS_00045040 lncRNA upstream 245968 32408778 ~ 32417158 (-) False XLOC_022492
TCONS_00045041 lncRNA upstream 245968 32408778 ~ 32557718 (-) False XLOC_022492
TCONS_00045042 lncRNA upstream 296045 32458855 ~ 32461920 (-) True XLOC_022493
TCONS_00045043 lncRNA upstream 327356 32490166 ~ 32496144 (-) True XLOC_022494
TCONS_00044347 mRNA downstream 26173 32128718 ~ 32129614 (-) True XLOC_022483
TCONS_00044346 mRNA downstream 26218 32128399 ~ 32129569 (-) False XLOC_022483
TCONS_00044344 mRNA downstream 55681 32087902 ~ 32100106 (-) False XLOC_022481
TCONS_00044343 mRNA downstream 63344 32079046 ~ 32092443 (-) False XLOC_022481
TCONS_00044342 mRNA downstream 181727 31972384 ~ 31974060 (-) True XLOC_022479
TCONS_00044354 mRNA upstream 36778 32199588 ~ 32236122 (-) True XLOC_022486
TCONS_00044355 mRNA upstream 75527 32238337 ~ 32304754 (-) False XLOC_022487
TCONS_00044356 mRNA upstream 76528 32239338 ~ 32304692 (-) False XLOC_022487
TCONS_00044357 mRNA upstream 99915 32262725 ~ 32304650 (-) True XLOC_022487
TCONS_00044358 mRNA upstream 146004 32308814 ~ 32334208 (-) False XLOC_022488
TCONS_00044348 other downstream 15829 32139843 ~ 32139958 (-) True XLOC_022484
TCONS_00044337 other downstream 242545 31906998 ~ 31913242 (-) False XLOC_022476
TCONS_00044334 other downstream 351427 31803082 ~ 31804360 (-) True XLOC_022475
TCONS_00044329 other downstream 400919 31754752 ~ 31754868 (-) True XLOC_022474
TCONS_00044327 other downstream 438077 31693368 ~ 31717710 (-) True XLOC_022472
TCONS_00044359 other upstream 163157 32325967 ~ 32334114 (-) True XLOC_022488
TCONS_00044367 other upstream 712736 32875546 ~ 32875660 (-) True XLOC_022497
TCONS_00044368 other upstream 1056195 33219005 ~ 33219128 (-) True XLOC_022498
TCONS_00044369 other upstream 1138494 33301304 ~ 33301419 (-) True XLOC_022500
TCONS_00044391 other upstream 1576667 33739477 ~ 33744771 (-) False XLOC_022510

Expression Profile

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