RNA id: TU1494816


Basic Information

Item Value
RNA id TU1494816
length 285
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G1310306
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 57015503 ~ 57015838 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggatggagagagaatgtacattaagtacactcttagaaaaaagggtccCAAAAGGGTATTTGGCTGTCCCTGTAGGATAAACTTTTTTTAGTTCCATGTAGACCCCAGTACCTGGaacttaaccccttaaggttctagatagcaccttttttctaagagcatACCACCAAACCGAAGGGAGAGAAATGTAATTGGTGAGAGAAAAGGATGGAAGAtaaagaaagggaggaggggagagaaaaatGGCATAAAGGACCGGGGGAGGAataagggaggaggggagag

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1494799 lncRNA downstream 17566 56996170 ~ 56997937 (-) True G1310289
TU1494754 lncRNA downstream 74237 56940809 ~ 56941266 (-) True G1310246
TU1494753 lncRNA downstream 74736 56940263 ~ 56940767 (-) True G1310245
TU1494752 lncRNA downstream 76120 56938991 ~ 56939383 (-) True G1310244
TU1494751 lncRNA downstream 77067 56938183 ~ 56938436 (-) True G1310243
TU1495182 lncRNA upstream 47524 57063362 ~ 57064508 (-) False G1310620
TU1495183 lncRNA upstream 47524 57063362 ~ 57065998 (-) True G1310620
TU1495193 lncRNA upstream 63116 57078954 ~ 57079259 (-) True G1310630
TU1495194 lncRNA upstream 63586 57079424 ~ 57079856 (-) True G1310631
TU1495195 lncRNA upstream 64359 57080197 ~ 57080469 (-) True G1310632
XM_021563727.2 mRNA downstream 139905 56832325 ~ 56875598 (-) False LOC110490371
XM_021563729.2 mRNA downstream 139905 56832325 ~ 56875598 (-) False LOC110490371
XM_036944730.1 mRNA downstream 139905 56832325 ~ 56875598 (-) True LOC110490371
XM_036944732.1 mRNA downstream 141870 56832325 ~ 56873633 (-) False LOC110490371
XM_021563714.2 mRNA downstream 212726 56795350 ~ 56802777 (-) True LOC110490365
XM_021563736.2 mRNA upstream 14306 57030144 ~ 57037049 (-) False LOC110490376
XM_021563739.2 mRNA upstream 14306 57030144 ~ 57037055 (-) True LOC110490376
LOC110490760 mRNA upstream 21676 57037514 ~ 57039997 (-) True LOC110490760
XM_021563740.2 mRNA upstream 23950 57039788 ~ 57050771 (-) True LOC110490378
XM_021563741.2 mRNA upstream 37133 57052971 ~ 57058823 (-) True LOC110490379
TU1494769 other downstream 41985 56971741 ~ 56973518 (-) True G1310261
TU1493546 other downstream 960439 56054491 ~ 56055064 (-) True G1309187
TU1493247 other downstream 1267750 55746285 ~ 55747753 (-) True G1308906
TU1493163 other downstream 1458929 55556232 ~ 55556574 (-) True G1308831
TU1493091 other downstream 1596258 55418323 ~ 55419245 (-) True LOC110490757
TU1495171 other upstream 109976 57125814 ~ 57143499 (-) True LOC110490385
TU1495287 other upstream 226842 57242680 ~ 57247843 (-) False LOC110490387
TU1495288 other upstream 226842 57242680 ~ 57247779 (-) True LOC110490387
TU1495318 other upstream 363001 57378839 ~ 57441427 (-) True G1310744
TU1496557 other upstream 1133148 58148986 ~ 58149397 (-) True G1311818

Expression Profile