RNA id: TU1499927


Basic Information

Item Value
RNA id TU1499927
length 247
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G1314792
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 60989032 ~ 60994320 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cactcttttgttgctgagaggTTTCCTCAACATAAttccaaaagggttttctaatggtaaattagcctttaaaattataaacttggattagctaacacaacgtgccattggaatacaggagtcatggttgctgataatatgcctctgtatgcctatgtagatattccattaaaaaatctgccgtttccagctacaacagtcatttacaacattaacaatgtctacactgtatttctgatcaatttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1499907 lncRNA downstream 43125 60944769 ~ 60945907 (-) True G1314773
TU1499860 lncRNA downstream 148424 60840341 ~ 60840608 (-) True G1314727
TU1499856 lncRNA downstream 152367 60836430 ~ 60836665 (-) True G1314723
TU1499853 lncRNA downstream 157150 60831666 ~ 60831882 (-) True G1314720
TU1499441 lncRNA downstream 166744 60821990 ~ 60822288 (-) True G1314368
TU1499934 lncRNA upstream 11343 61005663 ~ 61009332 (-) False G1314798
TU1499935 lncRNA upstream 11343 61005663 ~ 61094637 (-) False G1314798
TU1499936 lncRNA upstream 11343 61005663 ~ 61034816 (-) True G1314798
TU1499937 lncRNA upstream 93615 61087935 ~ 61090439 (-) True G1314799
TU1500005 lncRNA upstream 194488 61188808 ~ 61194701 (-) True LOC110490506
XM_036944880.1 mRNA downstream 15960 60926634 ~ 60973072 (-) True LOC110490490
XM_036944879.1 mRNA downstream 33560 60926634 ~ 60955472 (-) False LOC110490490
XM_036944877.1 mRNA downstream 292445 60676532 ~ 60696587 (-) True LOC110490487
XM_036944876.1 mRNA downstream 292474 60676532 ~ 60696558 (-) False LOC110490487
XM_021563894.2 mRNA downstream 385714 60594114 ~ 60603318 (-) True LOC110490486
XM_021563907.2 mRNA upstream 30326 61024646 ~ 61042835 (-) False LOC110490493
XM_021563905.2 mRNA upstream 30326 61024646 ~ 61064689 (-) False LOC110490493
XM_021563906.2 mRNA upstream 30326 61024646 ~ 61065011 (-) True LOC110490493
LOC110490497 mRNA upstream 73988 61068308 ~ 61071015 (-) True LOC110490497
XM_021563913.2 mRNA upstream 81455 61075775 ~ 61080602 (-) False LOC110490496
TU1499377 other downstream 216544 60772145 ~ 60772488 (-) True G1314304
TU1497735 other downstream 1564725 59420247 ~ 59424307 (-) False G1312865
TU1496819 other downstream 2297650 58689604 ~ 58691382 (-) False G1312023
TU1496820 other downstream 2298018 58689604 ~ 58691014 (-) True G1312023
TU1496827 other downstream 2298675 58634282 ~ 58690357 (-) False G1312023
TU1500688 other upstream 616100 61610420 ~ 61612116 (-) True G1315398
TU1500823 other upstream 840306 61834626 ~ 61836206 (-) False G1315509
TU1500832 other upstream 841058 61835378 ~ 61836002 (-) False G1315509
TU1500894 other upstream 870710 61865030 ~ 61865660 (-) False G1315519
TU1500896 other upstream 870710 61865030 ~ 61891421 (-) False G1315519

Expression Profile