RNA id: TU1500189


Basic Information

Item Value
RNA id TU1500189
length 1428
lncRNA type read_through
GC content 0.44
exon number 5
gene id G1314981
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 61474924 ~ 61485677 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTACTTCAATAGACGATCAGGATGCTCTGCTCACAAGGACCTTGGGACTCTGGCGGCAGCAGGgaatttgaaaataaaaatgaagTCTGGATTTATTCAGATGCTGAGGAAGAGGAAAGAGcTCATTCCTCTGATCGGCATTGTGGCATTGGCTGCTGTAGGAGCCACCTCTACCTCACTCTACTTCCTATTTACAAAGAAGGATGTCATTTTAAATAAAAGCACAAACCCTGAACCCTGGGAGAGACTGGACCCATCTAAACCACAGAAGCTGGTCACTATCAACCAGAAATGGAGGCCCATTGAAGAGCTGGAGCTGGTGAAGAGTATGACTAAGTgatctctctatctttctatttctctccattctctcccatTCCTCCCCCCCTCCATCCTGTATGAGAGCTGCCTCCTTGCCCTTCCTGCACCCCTTCCCAGTCTAGCAGAATCCTTTCTGCCCAGACTAGATTCTCTGATACTTAGTGTGCGGAAACGCTTCTGCTATACTGGTGGGGTATAACTGTGCTCAATACTGTCCCCAGGACTGAGGATGTCCACAGCTGTAGTGTTACTTACATCACCAGGCTGTAAAGAGTAAAAGCTTTTGTCTTCACTGTaaaccagctgtctgtctgtcccagtgatgttactgcactgtactgcactATAGCTGACTCTAAATGTGACCACAGCTGTTTGTTTGTGAAacaaactgtatgtgtgtgtgaaataaTAATTATTGCAATAAAAATTTACCATTGCTTGTGTTATTAATGAGGAGTTAAGTATGTCCATTCTGGTGGTTGTTTTCAAAAGCGTGTGTCCCCAACTATCATCAAGGTAACTTGATCACAGCTCTGTctggcttctctctgtctctgtccccagaAGTGTGTCTGATGGAGACATTCATCTGTGTAACGAAAGCCCTTGTGCCAAACTGTTCATAAGGTGACATCATAGTTCTGTCTGGcttctgtctgtgtcccaaaatgTCAGTCTAGAATTAGTATTCAGAAATCATTATCGTCCATGCATTGTCTTGACTGATCGAACAGTCCTaatgcaccagacagggctgctTGGAGCCAATCCCTCTCTTAACATAATTACTGATTACAGTAATCAGGCAGAGGGAGAGCAGGATGGGGATAGAGTTACCCTCAAgacagtgtgtgtctgttgtgtctgtgtgCAGAGACAGTCCTCTTACGGATTGGTGGAGCAATAACACCTACATGTCCCTCTCATAAAGCGTTATTATTATATCACCACTTACTAcatgtatacactgagtgtacaaaacattaggaacacctgctctcaccatgacatagaatgaccaggggaatccaggtgaaTGACCCCTTATTGATTAActgttgaatccacttcaatcagtgtagatggaggagacaggttaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1500200 lncRNA downstream 6206 61468518 ~ 61468718 (-) True G1314987
TU1500195 lncRNA downstream 17805 61456905 ~ 61457119 (-) True G1314982
TU1500180 lncRNA downstream 19978 61454577 ~ 61454946 (-) True LOC100653449
TU1500173 lncRNA downstream 48792 61425093 ~ 61426132 (-) True G1314969
TU1500170 lncRNA downstream 52908 61421811 ~ 61422016 (-) True G1314967
TU1500211 lncRNA upstream 7112 61492789 ~ 61493156 (-) True G1314993
TU1500218 lncRNA upstream 17465 61503142 ~ 61503650 (-) True G1315000
TU1500244 lncRNA upstream 36077 61521754 ~ 61522649 (-) False LOC110490517
TU1500245 lncRNA upstream 36425 61522102 ~ 61522649 (-) True LOC110490517
TU1500251 lncRNA upstream 38527 61524204 ~ 61524452 (-) True G1315024
XR_002468710.2 mRNA downstream 8937 61427711 ~ 61465987 (-) False LOC100653449
XM_021563938.2 mRNA downstream 8940 61426711 ~ 61465984 (-) False LOC100653449
XM_021563939.2 mRNA downstream 8941 61426711 ~ 61465983 (-) False LOC100653449
XM_021563940.2 mRNA downstream 19964 61426711 ~ 61454960 (-) False LOC100653449
XM_036944899.1 mRNA downstream 59834 61409908 ~ 61415090 (-) True LOC110490513
XR_002468711.2 mRNA upstream 36075 61521752 ~ 61524082 (-) False LOC110490517
XR_005036156.1 mRNA upstream 53716 61539393 ~ 61557927 (-) True LOC110490518
XM_021563966.2 mRNA upstream 128260 61613937 ~ 61633036 (-) False LOC110490529
XM_021563965.2 mRNA upstream 128260 61613937 ~ 61646356 (-) False LOC110490529
XR_002468713.2 mRNA upstream 128260 61613937 ~ 61646356 (-) False LOC110490529
TU1499377 other downstream 702436 60772145 ~ 60772488 (-) True G1314304
TU1497735 other downstream 2050617 59420247 ~ 59424307 (-) False G1312865
TU1496819 other downstream 2783542 58689604 ~ 58691382 (-) False G1312023
TU1496820 other downstream 2783910 58689604 ~ 58691014 (-) True G1312023
TU1496827 other downstream 2784567 58634282 ~ 58690357 (-) False G1312023
TU1500688 other upstream 124743 61610420 ~ 61612116 (-) True G1315398
TU1500823 other upstream 348949 61834626 ~ 61836206 (-) False G1315509
TU1500832 other upstream 349701 61835378 ~ 61836002 (-) False G1315509
TU1500894 other upstream 379353 61865030 ~ 61865660 (-) False G1315519
TU1500896 other upstream 379353 61865030 ~ 61891421 (-) False G1315519