RNA id: TU1500211


Basic Information

Item Value
RNA id TU1500211
length 368
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G1314993
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 61492789 ~ 61493156 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCAAAAGCAaagtgcacaaatgtgtttatccAACTTTCTTGGCTGTCTCATGGTGTGTGTAAGGGTGTCATGATCGGGATAGCCTGAACTCAAGGCCCATTAGATTATCAAGGCAAATCACAGTAACTTCAGTGAAAACACTAGTAACTTCATTTACTGCTATTTGCCTTGATTTTTACTTGGATTTTGTAGTTAAAGCAAATTTGACACAAGATACGCCGATACTACAAAGACTGATTTCAGTCTTAACTCAATTTTGACCAAATGTGTAGTTACTGCTGTTTtcaattgtaatgtttttttgtcCATTGTGTATTTCCGTTGGCGGAATATTTAAATAAAGCCTTGAATAAAAGAAAAAGGATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1500185 lncRNA downstream 7112 61474924 ~ 61485677 (-) False G1314981
TU1500189 lncRNA downstream 7112 61474924 ~ 61485677 (-) False G1314981
TU1500190 lncRNA downstream 7112 61474924 ~ 61485677 (-) False G1314981
TU1500186 lncRNA downstream 7112 61482901 ~ 61485677 (-) False G1314981
TU1500188 lncRNA downstream 7112 61482901 ~ 61485677 (-) False G1314981
TU1500218 lncRNA upstream 9986 61503142 ~ 61503650 (-) True G1315000
TU1500244 lncRNA upstream 28598 61521754 ~ 61522649 (-) False LOC110490517
TU1500245 lncRNA upstream 28946 61522102 ~ 61522649 (-) True LOC110490517
TU1500251 lncRNA upstream 31048 61524204 ~ 61524452 (-) True G1315024
TU1500252 lncRNA upstream 31310 61524466 ~ 61524685 (-) True G1315025
XM_036944901.1 mRNA downstream 7027 61483101 ~ 61485762 (-) True LOC110490515
XM_036944900.1 mRNA downstream 14843 61475576 ~ 61477946 (-) True LOC110490514
XR_002468710.2 mRNA downstream 26802 61427711 ~ 61465987 (-) False LOC100653449
XM_021563938.2 mRNA downstream 26805 61426711 ~ 61465984 (-) False LOC100653449
XM_021563939.2 mRNA downstream 26806 61426711 ~ 61465983 (-) False LOC100653449
XR_002468711.2 mRNA upstream 28596 61521752 ~ 61524082 (-) False LOC110490517
XR_005036156.1 mRNA upstream 46237 61539393 ~ 61557927 (-) True LOC110490518
XM_021563966.2 mRNA upstream 120781 61613937 ~ 61633036 (-) False LOC110490529
XM_021563965.2 mRNA upstream 120781 61613937 ~ 61646356 (-) False LOC110490529
XR_002468713.2 mRNA upstream 120781 61613937 ~ 61646356 (-) False LOC110490529
TU1499377 other downstream 720301 60772145 ~ 60772488 (-) True G1314304
TU1497735 other downstream 2068482 59420247 ~ 59424307 (-) False G1312865
TU1496819 other downstream 2801407 58689604 ~ 58691382 (-) False G1312023
TU1496820 other downstream 2801775 58689604 ~ 58691014 (-) True G1312023
TU1496827 other downstream 2802432 58634282 ~ 58690357 (-) False G1312023
TU1500688 other upstream 117264 61610420 ~ 61612116 (-) True G1315398
TU1500823 other upstream 341470 61834626 ~ 61836206 (-) False G1315509
TU1500832 other upstream 342222 61835378 ~ 61836002 (-) False G1315509
TU1500894 other upstream 371874 61865030 ~ 61865660 (-) False G1315519
TU1500896 other upstream 371874 61865030 ~ 61891421 (-) False G1315519

Expression Profile